CAZyme3D

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Entry ID

Information for CAZyme ID: QHC53716.1

Basic Information

GenBank IDQHC53716.1
FamilyGT101, GT8
Sequence Length672
UniProt IDA0A6P1EW46(100,100)Download
Average pLDDT?92.79
CAZy50 ID41673
CAZy50 RepNo, AEB93781.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2690380
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLactobacillus
SpeciesLactobacillus sp. JM1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDTIALDADV  NDLNKIETTL  KSIFLHNQHV  EIHIINFNIP  HEWFINVNQY  VNQFGSKIID60
EKIDPNFLGN  VHTSSDQIKK  ISFGRFLIPD  LISADKVLYL  DSDLIVTDNL  QSIFQMNFDD120
KMLFAVHDYQ  NPDQFNSSVM  LINNKRWREE  KMSSKLIEMS  KKQGLANDQA  IINEVFKDKI180
GKLNLSYNYQ  IGLEKNAYWN  NKQVVFDNYN  RVPIPRIINY  SGDDNPFNLV  STGDLRNNWW240
QYHNLEWSDI  VKRYGKFDKS  KVRRPEFDAE  AFIFARVAET  KDLELLIQNL  SNVRFNIASY300
TNMSWLLEKL  VKYDNVQLYP  FVMNPTLDNL  ISNADFSLDI  NYLKEDDVTE  KIINQQKPIL360
SFEETKNNNI  SYDKYYVFAN  DAQDEMVEAI  KKIIDKKKET  SAFDIKVKDI  DESLDLILNK420
HKSVIRFGDG  EFNIIRGESI  FYQDYNKELA  LRLESIILSG  NYDNTLICLP  DVFEDLARYN480
DYAQRTYKKR  FFPQNAAFLK  RIEQTRNWYG  STFVSRPYID  LVDKSESPGY  FEKLRQIWNQ540
RDVLIVEGKY  SGSGVRNDLF  DNAKSIKRIL  CPAKNSYEKI  DQIEQTIRNN  AQNRLILLML600
GPTAKVIVDD  LQDLNNQKID  IGHIDSEYEW  FKMGVTDKVK  LKNKHTAEFN  RDANIAPIHD660
KTYSSQVIER  IE672

Predicted 3D structure by AlphaFold2 with pLDDT = 92.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT8(4-228)+GT101(424-648)

MDTIALDADV  NDLNKIETTL  KSIFLHNQHV  EIHIINFNIP  HEWFINVNQY  VNQFGSKIID60
EKIDPNFLGN  VHTSSDQIKK  ISFGRFLIPD  LISADKVLYL  DSDLIVTDNL  QSIFQMNFDD120
KMLFAVHDYQ  NPDQFNSSVM  LINNKRWREE  KMSSKLIEMS  KKQGLANDQA  IINEVFKDKI180
GKLNLSYNYQ  IGLEKNAYWN  NKQVVFDNYN  RVPIPRIINY  SGDDNPFNLV  STGDLRNNWW240
QYHNLEWSDI  VKRYGKFDKS  KVRRPEFDAE  AFIFARVAET  KDLELLIQNL  SNVRFNIASY300
TNMSWLLEKL  VKYDNVQLYP  FVMNPTLDNL  ISNADFSLDI  NYLKEDDVTE  KIINQQKPIL360
SFEETKNNNI  SYDKYYVFAN  DAQDEMVEAI  KKIIDKKKET  SAFDIKVKDI  DESLDLILNK420
HKSVIRFGDG  EFNIIRGESI  FYQDYNKELA  LRLESIILSG  NYDNTLICLP  DVFEDLARYN480
DYAQRTYKKR  FFPQNAAFLK  RIEQTRNWYG  STFVSRPYID  LVDKSESPGY  FEKLRQIWNQ540
RDVLIVEGKY  SGSGVRNDLF  DNAKSIKRIL  CPAKNSYEKI  DQIEQTIRNN  AQNRLILLML600
GPTAKVIVDD  LQDLNNQKID  IGHIDSEYEW  FKMGVTDKVK  LKNKHTAEFN  RDANIAPIHD660
KTYSSQVIER  IE672

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help