CAZyme3D

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Entry ID

Information for CAZyme ID: QGZ37417.1

Basic Information

GenBank IDQGZ37417.1
FamilyGT51
Sequence Length743
UniProt IDA0A857CEY1(100,100)Download
Average pLDDT?78.90
CAZy50 ID16925
CAZy50 RepNo, BCP55952.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID538381
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusStappia
SpeciesStappia indica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLTGADRPA  AGGHAPSSSS  PSSSAPARKR  APRKAASLES  AGNGSGNASG  SGSGLGGVSG60
GRLSGGGGNG  SGGKGGGRKG  GRGKSRAKRQ  RGGISRLLKR  GLYWGFVLCI  WGGIAGVGVL120
IYYAAYLPPT  SEWKVPQRPP  NVRIVAADGT  LMANRGDTGG  EAVRLEQLPP  YLPQAVIAIE180
DRRFYSHFGL  DPLGLGRAVL  TNITSGRLVQ  GGSTLTQQLA  KNLFLEPDRT  LRRKVQEAVL240
ALWLETNYSK  DEILEMYLNR  VYFGAGAYGV  DAAARRYFGK  SARLISVSEA  ATLAGLLKAP300
SRYAPTRNPD  LAQERATTVL  AAMAEEGYLT  DTEARDAIAA  PLRVVTHHTS  ASENYVADWV360
MELLPGYVGA  IEDDIVVDTT  IDLGLQIIAE  DSLRRALSEE  GAKLGVGQGA  IVTLDGSGAV420
KALVGGRDYA  QSQFNRAVNA  RRQPGSAFKP  FVYLAALERG  LTPATVRVDE  PVKIGKWAPK480
NYTKTYRGPV  TLTEALSLSL  NTVAARLAEE  VGPRAIIRTA  RKLGITSPLA  SNLSISLGTS540
EVTPLEIAAG  YTPFSNGGYA  VVPHVIRQIR  TLEGKVLYAR  TGDGAGRVID  HATLADMNMM600
MAQTLTTGTG  KIANLPGRPA  GGKTGTSQDF  RDGWFIGYTG  SLTTAVWLGN  DDNSPTKRAT660
GGSLPAKVWK  DVMQAGHQGL  PVASLPGVSD  RPVQVAEPAA  APLDMPMRDI  PAEGDPSRRL720
PPMRDSGGGG  GGPLDLLNRI  FGG743

Predicted 3D structure by AlphaFold2 with pLDDT = 78.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(149-323)

MRLTGADRPA  AGGHAPSSSS  PSSSAPARKR  APRKAASLES  AGNGSGNASG  SGSGLGGVSG60
GRLSGGGGNG  SGGKGGGRKG  GRGKSRAKRQ  RGGISRLLKR  GLYWGFVLCI  WGGIAGVGVL120
IYYAAYLPPT  SEWKVPQRPP  NVRIVAADGT  LMANRGDTGG  EAVRLEQLPP  YLPQAVIAIE180
DRRFYSHFGL  DPLGLGRAVL  TNITSGRLVQ  GGSTLTQQLA  KNLFLEPDRT  LRRKVQEAVL240
ALWLETNYSK  DEILEMYLNR  VYFGAGAYGV  DAAARRYFGK  SARLISVSEA  ATLAGLLKAP300
SRYAPTRNPD  LAQERATTVL  AAMAEEGYLT  DTEARDAIAA  PLRVVTHHTS  ASENYVADWV360
MELLPGYVGA  IEDDIVVDTT  IDLGLQIIAE  DSLRRALSEE  GAKLGVGQGA  IVTLDGSGAV420
KALVGGRDYA  QSQFNRAVNA  RRQPGSAFKP  FVYLAALERG  LTPATVRVDE  PVKIGKWAPK480
NYTKTYRGPV  TLTEALSLSL  NTVAARLAEE  VGPRAIIRTA  RKLGITSPLA  SNLSISLGTS540
EVTPLEIAAG  YTPFSNGGYA  VVPHVIRQIR  TLEGKVLYAR  TGDGAGRVID  HATLADMNMM600
MAQTLTTGTG  KIANLPGRPA  GGKTGTSQDF  RDGWFIGYTG  SLTTAVWLGN  DDNSPTKRAT660
GGSLPAKVWK  DVMQAGHQGL  PVASLPGVSD  RPVQVAEPAA  APLDMPMRDI  PAEGDPSRRL720
PPMRDSGGGG  GGPLDLLNRI  FGG743

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help