CAZyme3D

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Entry ID

Information for CAZyme ID: QGT46411.1

Basic Information

GenBank IDQGT46411.1
FamilyGH2
Sequence Length1067
UniProt IDA0A315SAE0(100,100)Download
Average pLDDT?91.38
CAZy50 ID9338
CAZy50 RepNo, AEK29936.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID302911
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium animalis
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A315SAE0.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNEETLQEVA  EEKATEPPRN  DVPSTDGALR  SEEPTAAWLT  DPRVFAVNRL  PGHTDHNCAD60
DQSGALKQHL  DGEWAVKVVP  SHLDRLPTEG  LDEHWQHAHL  PPEFASRSFA  DGDFTRVQVP120
GCLEMQGLMR  PQYVNIQYPW  DGHENPQAPS  VPTDNLVALY  RRAFTADDRV  GEALSRGERV180
SLTFHGAATA  IYVWLNGVFV  GYAEDSYTPS  EFDVTEALHA  GENLLAVACF  QYSSASWLED240
QDCWRFHGLF  RDVELEVRPH  AHVRDMLAHA  DWNVDAQCGE  LAVELDLDGA  WCAANVELRL300
STWEEHADGA  ALLWSATVES  APKIRYATTC  EQVLPWSAEQ  PNLYVLEAVV  RDANGRVLET360
ARTRIGFRHV  EIRDGVLVLN  GERIVFHGVN  RHEFDARRGR  SVTEEDMLWD  VRFMKRHNIN420
AVRTSHYPNQ  TRWMELCDEY  GLYVIDEANL  ETHGSWNLPG  DTADGVSIPG  DDVRWQPACV480
DRVESMVRRD  RNHACVVAWS  LGNESYAGDV  IRAMGNRCRE  LDPTRPVHYE  GVTWNREYDD540
ISDFESRMYA  KPDEIREYLE  SDPAKPYISC  EFMHAMGNSV  GGLGEYVALE  RYPQYQGGFI600
WDFMDQALWQ  RLDDGTERLA  YGGDFGDRPS  DYEFSGDGIV  FADRTVSAKA  QEVKAQYAGV660
RLEPDGRGVR  VTNTNAFQGT  SGTVFVARML  LDGREAWSKS  YEFEVAAGSA  RSFDIGFPDV720
HSLPDGGVMH  EVVYEVSQQL  AHDTAWAEAG  YEIAWGQAVV  RPHASGRSGS  KMNDAFDDDN780
LQIVTLGRWN  AGVRVGQREI  LLSRTHGGVI  SLRDGEREYV  IRVPKLLTFR  PLTDNDRGMS840
SGFDRVQWFG  AGRYARVVTG  VGQVYRDELT  GDLCGEYWYE  LADGAQTQVP  IRYRIDSQLR900
MHIELEYTGC  AGAPSLPAFG  LEWMLPKQYE  NLEFYGRGPA  ETYRDRKRAK  LGIWNTTAQA960
DMAPYLVPQE  TGNHEDVRWA  YVFDADCHGL  LVEADDSLAL  SLLPHSSLEI  ENATHQNELA1020
QPRHMFLRLL  AGQMGVGGDD  SWGAPVHDRY  LLPADEPLKL  AVTISML1067

Predicted 3D structure by AlphaFold2 with pLDDT = 91.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(60-950)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help