CAZyme3D

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Entry ID

Information for CAZyme ID: QGQ98288.1

Basic Information

GenBank IDQGQ98288.1
FamilyGH116
Sequence Length874
UniProt IDA0A6B8RSU1(100,100)Download
Average pLDDT?94.05
CAZy50 ID19097
CAZy50 RepNo, BAM01381.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1778678
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus psychroresistens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKIYTGSKA  KEISFPLGGI  GTGSIGLAGN  GSLIDWEIYN  RPNKRSFNGF  SHFAVKAEAD60
GNLLDARVLN  GDLHSPYVGE  YVRGGAQHSG  YGYGPESNTM  AGMPHFKDVA  FSGEFPLAEM120
TFSDNYFPGN  ITLNAFNPLI  PLNDLDSSIP  AAFFEIEFEN  TSDISIAYTA  CLSVGNRELT180
GLIHHQHHVK  EADASTYHIT  KLSSSNYSMD  DPRFGDISLA  TDASSVSFQE  FWYRGGWCDN240
LEMFWRDFTK  PGLLTNRSYT  EDRGLHPRHN  DMSSLAAHIE  LLPGAKQKIR  FVISWSYPNC300
QNFWNPEKGE  PTIWKNYYAT  IFEDSCASAA  YALQHWNRLY  EDTRLFKETL  FASTLPPVVL360
EAISANLSVL  KSPTVLRLTD  GSFYGFEGCI  ADVGSCEGSC  THVWNYAYAL  PFLFPKLERS420
MHELDFKYNK  RADGRMSFRL  MLPVGRETAD  FHACADGQFG  GVIKAYRDWK  ISGDFPYLES480
NWAAIKQSIE  YAWAESNEDK  WDPQKRGVLE  GRQHHTLDME  LYGPNSWLNG  FYLAALKAGA540
EMAAYLGEHE  VAVEYSRIFE  KGRKWTDEHL  FNGDYYTQKV  DLQDRSLLER  FSAGETIFGD600
NALQAYWNEE  VQEIKYQISG  GCMIDQVIAQ  WHANLCGLGE  IFDKQQVRKA  LQALYRNNFK660
PSMRNEANTW  RLYSLNDEGG  LIICSWPDGS  IKPAVPLTYA  PETMTGFEYQ  AASHMIQEGL720
IEEGLSIVMA  IRNRYDGEKR  NPWNEIECGS  NYARSMASYS  LLNAFSGFEF  NAVEGMIGFH780
PVLAPNGSFQ  TFWSLEGGWG  LFKADADTVV  LQVLNGTLNL  SILKLPEDWL  TKIKSVQSAN840
VELSYQLAPT  HIYFPTPLIL  NDSHSLSINL  IPAL874

Predicted 3D structure by AlphaFold2 with pLDDT = 94.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH116(385-761)

MKKIYTGSKA  KEISFPLGGI  GTGSIGLAGN  GSLIDWEIYN  RPNKRSFNGF  SHFAVKAEAD60
GNLLDARVLN  GDLHSPYVGE  YVRGGAQHSG  YGYGPESNTM  AGMPHFKDVA  FSGEFPLAEM120
TFSDNYFPGN  ITLNAFNPLI  PLNDLDSSIP  AAFFEIEFEN  TSDISIAYTA  CLSVGNRELT180
GLIHHQHHVK  EADASTYHIT  KLSSSNYSMD  DPRFGDISLA  TDASSVSFQE  FWYRGGWCDN240
LEMFWRDFTK  PGLLTNRSYT  EDRGLHPRHN  DMSSLAAHIE  LLPGAKQKIR  FVISWSYPNC300
QNFWNPEKGE  PTIWKNYYAT  IFEDSCASAA  YALQHWNRLY  EDTRLFKETL  FASTLPPVVL360
EAISANLSVL  KSPTVLRLTD  GSFYGFEGCI  ADVGSCEGSC  THVWNYAYAL  PFLFPKLERS420
MHELDFKYNK  RADGRMSFRL  MLPVGRETAD  FHACADGQFG  GVIKAYRDWK  ISGDFPYLES480
NWAAIKQSIE  YAWAESNEDK  WDPQKRGVLE  GRQHHTLDME  LYGPNSWLNG  FYLAALKAGA540
EMAAYLGEHE  VAVEYSRIFE  KGRKWTDEHL  FNGDYYTQKV  DLQDRSLLER  FSAGETIFGD600
NALQAYWNEE  VQEIKYQISG  GCMIDQVIAQ  WHANLCGLGE  IFDKQQVRKA  LQALYRNNFK660
PSMRNEANTW  RLYSLNDEGG  LIICSWPDGS  IKPAVPLTYA  PETMTGFEYQ  AASHMIQEGL720
IEEGLSIVMA  IRNRYDGEKR  NPWNEIECGS  NYARSMASYS  LLNAFSGFEF  NAVEGMIGFH780
PVLAPNGSFQ  TFWSLEGGWG  LFKADADTVV  LQVLNGTLNL  SILKLPEDWL  TKIKSVQSAN840
VELSYQLAPT  HIYFPTPLIL  NDSHSLSINL  IPAL874

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help