CAZyme3D

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Entry ID

Information for CAZyme ID: QGQ98186.1

Basic Information

GenBank IDQGQ98186.1
FamilyGT108
Sequence Length314
UniProt IDA0A6B8RS71(100,100)Download
Average pLDDT?97.02
CAZy50 ID138756
CAZy50 RepNo, AEV20975.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1778678
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus psychroresistens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLQQTTTQS  SAELLAQFDG  SSLPLGQIIR  FEGVGNRDVY  NITAAFIDQG  ELIIAGRVED60
RETEFSEVVF  FRQSEDVWTP  HPDYPAYAMQ  DPFFTWIKGE  LVLGGVRVIA  DPQHPENIVA120
WVTEYYRGKD  IASLELFFMG  PYHMKDLRLI  ELASGEIGVI  TRPQGYKGGR  GKIGFYKVGS180
LNEITVKDIY  NAPLFLDQFL  DVEWGGANEP  HLLSNGLIGV  LGHIACYDAT  GARHYQAMAF240
AFNPDTMEKT  QMKLIAQRSN  FPEGPYKHKD  LVDVIFSGGL  VRKEGGLADL  YVGASDAEAY300
VIEIPDPFLE  YEAL314

Predicted 3D structure by AlphaFold2 with pLDDT = 97.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT108(27-308)

MLLQQTTTQS  SAELLAQFDG  SSLPLGQIIR  FEGVGNRDVY  NITAAFIDQG  ELIIAGRVED60
RETEFSEVVF  FRQSEDVWTP  HPDYPAYAMQ  DPFFTWIKGE  LVLGGVRVIA  DPQHPENIVA120
WVTEYYRGKD  IASLELFFMG  PYHMKDLRLI  ELASGEIGVI  TRPQGYKGGR  GKIGFYKVGS180
LNEITVKDIY  NAPLFLDQFL  DVEWGGANEP  HLLSNGLIGV  LGHIACYDAT  GARHYQAMAF240
AFNPDTMEKT  QMKLIAQRSN  FPEGPYKHKD  LVDVIFSGGL  VRKEGGLADL  YVGASDAEAY300
VIEIPDPFLE  YEAL314

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help