CAZyme3D

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Entry ID

Information for CAZyme ID: QGJ19985.1

Basic Information

GenBank IDQGJ19985.1
FamilyGH5
Sequence Length806
UniProt IDA0A5Q3HDP6(100,100)Download
Average pLDDT?91.48
CAZy50 ID24487
CAZy50 RepNo, ABE45326.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2082385
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPolaromonas
SpeciesPolaromonas sp. Pch-P

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRREFSQAA  LAAAALAALG  PLAVSRLAQA  AAARAAAGMP  AMGTNLSGME  WAKPGLRANT60
SSAPNLHFTV  PRKADVAYLA  ACGFSKNRLP  IQWELLQPML  HDTQANAAAK  AAIGNPGVFH120
VGYESFITGV  LDAHAAAGTR  CIIDNHNYGR  YQDFRFQPDG  SVIGLTVPPA  PMRPYTTDAV180
QIQSRIFSLA  AGATLKPAHF  ADFWTRAAAK  WKDHPGFGGY  GLMNEPHDMP  KPGGVIASNE240
EAVKGGEDLT  IWPTFAQAAV  QAIRAVDPIN  PIYVAGNQYD  SAMVIGTKNP  GFPLAGANLV300
YEVHMYLDAF  SNGAFFDYDT  EVAKNYSAGF  GSGPIKASTG  VDRLKIAVDW  AKAKGVKLAL360
TEVGMPIDDP  RWEAMFAQVA  VYAAQSGCEL  YTWMGGNHWP  IRNYAINHVP  GWHQSKTLEP420
AVSGVLKAAI  GIAQATLFDD  GPGYAPVGTP  LTITVYARGN  LAQPVVLTVA  SNKGGTFSKT480
RLTIPAGANG  QDSFTYTPAA  NLVATLTYIS  DGQLAGQLPP  PRKVFSLADP  VAYAATSLAD540
AALAIIAKYS  ACKWELADGH  TDYMLGAPAA  AGQVVRAVSD  SGYGSSPGNA  MEMINWINKD600
NGAAGPMSLP  VMRVTNGKKN  SDHSVPESFG  FWCKKSARMA  GVQPNPRNRV  PYNIEDAHFA660
IAALSVPASN  NTGVAFQASK  TEDLQLSELG  FTNGQPRARW  IDAKGLTVQL  LAPSKLAVNT720
PAVLALTSVA  GTQKLRINSA  ELASGAATFA  PSAFSQMLMG  CGYVSYYPRE  GFRGNLYAVI780
AGKGAPTAAE  LAVLERYLAS  TAGMTL806

Predicted 3D structure by AlphaFold2 with pLDDT = 91.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(42-400)

MQRREFSQAA  LAAAALAALG  PLAVSRLAQA  AAARAAAGMP  AMGTNLSGME  WAKPGLRANT60
SSAPNLHFTV  PRKADVAYLA  ACGFSKNRLP  IQWELLQPML  HDTQANAAAK  AAIGNPGVFH120
VGYESFITGV  LDAHAAAGTR  CIIDNHNYGR  YQDFRFQPDG  SVIGLTVPPA  PMRPYTTDAV180
QIQSRIFSLA  AGATLKPAHF  ADFWTRAAAK  WKDHPGFGGY  GLMNEPHDMP  KPGGVIASNE240
EAVKGGEDLT  IWPTFAQAAV  QAIRAVDPIN  PIYVAGNQYD  SAMVIGTKNP  GFPLAGANLV300
YEVHMYLDAF  SNGAFFDYDT  EVAKNYSAGF  GSGPIKASTG  VDRLKIAVDW  AKAKGVKLAL360
TEVGMPIDDP  RWEAMFAQVA  VYAAQSGCEL  YTWMGGNHWP  IRNYAINHVP  GWHQSKTLEP420
AVSGVLKAAI  GIAQATLFDD  GPGYAPVGTP  LTITVYARGN  LAQPVVLTVA  SNKGGTFSKT480
RLTIPAGANG  QDSFTYTPAA  NLVATLTYIS  DGQLAGQLPP  PRKVFSLADP  VAYAATSLAD540
AALAIIAKYS  ACKWELADGH  TDYMLGAPAA  AGQVVRAVSD  SGYGSSPGNA  MEMINWINKD600
NGAAGPMSLP  VMRVTNGKKN  SDHSVPESFG  FWCKKSARMA  GVQPNPRNRV  PYNIEDAHFA660
IAALSVPASN  NTGVAFQASK  TEDLQLSELG  FTNGQPRARW  IDAKGLTVQL  LAPSKLAVNT720
PAVLALTSVA  GTQKLRINSA  ELASGAATFA  PSAFSQMLMG  CGYVSYYPRE  GFRGNLYAVI780
AGKGAPTAAE  LAVLERYLAS  TAGMTL806

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help