Information for CAZyme ID: QGJ19985.1
Basic Information
GenBank ID | QGJ19985.1 |
Family | GH5 |
Sequence Length | 806 |
UniProt ID | A0A5Q3HDP6(100,100)![]() |
Average pLDDT? | 91.48 |
CAZy50 ID | 24487 |
CAZy50 Rep | No, ABE45326.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2082385 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Betaproteobacteria |
Order | Burkholderiales |
Family | Comamonadaceae |
Genus | Polaromonas |
Species | Polaromonas sp. Pch-P |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MQRREFSQAA LAAAALAALG PLAVSRLAQA AAARAAAGMP AMGTNLSGME WAKPGLRANT | 60 |
SSAPNLHFTV PRKADVAYLA ACGFSKNRLP IQWELLQPML HDTQANAAAK AAIGNPGVFH | 120 |
VGYESFITGV LDAHAAAGTR CIIDNHNYGR YQDFRFQPDG SVIGLTVPPA PMRPYTTDAV | 180 |
QIQSRIFSLA AGATLKPAHF ADFWTRAAAK WKDHPGFGGY GLMNEPHDMP KPGGVIASNE | 240 |
EAVKGGEDLT IWPTFAQAAV QAIRAVDPIN PIYVAGNQYD SAMVIGTKNP GFPLAGANLV | 300 |
YEVHMYLDAF SNGAFFDYDT EVAKNYSAGF GSGPIKASTG VDRLKIAVDW AKAKGVKLAL | 360 |
TEVGMPIDDP RWEAMFAQVA VYAAQSGCEL YTWMGGNHWP IRNYAINHVP GWHQSKTLEP | 420 |
AVSGVLKAAI GIAQATLFDD GPGYAPVGTP LTITVYARGN LAQPVVLTVA SNKGGTFSKT | 480 |
RLTIPAGANG QDSFTYTPAA NLVATLTYIS DGQLAGQLPP PRKVFSLADP VAYAATSLAD | 540 |
AALAIIAKYS ACKWELADGH TDYMLGAPAA AGQVVRAVSD SGYGSSPGNA MEMINWINKD | 600 |
NGAAGPMSLP VMRVTNGKKN SDHSVPESFG FWCKKSARMA GVQPNPRNRV PYNIEDAHFA | 660 |
IAALSVPASN NTGVAFQASK TEDLQLSELG FTNGQPRARW IDAKGLTVQL LAPSKLAVNT | 720 |
PAVLALTSVA GTQKLRINSA ELASGAATFA PSAFSQMLMG CGYVSYYPRE GFRGNLYAVI | 780 |
AGKGAPTAAE LAVLERYLAS TAGMTL | 806 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.48 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH5_5(42-400)
MQRREFSQAA LAAAALAALG PLAVSRLAQA AAARAAAGMP AMGTNLSGME WAKPGLRANT | 60 |
SSAPNLHFTV PRKADVAYLA ACGFSKNRLP IQWELLQPML HDTQANAAAK AAIGNPGVFH | 120 |
VGYESFITGV LDAHAAAGTR CIIDNHNYGR YQDFRFQPDG SVIGLTVPPA PMRPYTTDAV | 180 |
QIQSRIFSLA AGATLKPAHF ADFWTRAAAK WKDHPGFGGY GLMNEPHDMP KPGGVIASNE | 240 |
EAVKGGEDLT IWPTFAQAAV QAIRAVDPIN PIYVAGNQYD SAMVIGTKNP GFPLAGANLV | 300 |
YEVHMYLDAF SNGAFFDYDT EVAKNYSAGF GSGPIKASTG VDRLKIAVDW AKAKGVKLAL | 360 |
TEVGMPIDDP RWEAMFAQVA VYAAQSGCEL YTWMGGNHWP IRNYAINHVP GWHQSKTLEP | 420 |
AVSGVLKAAI GIAQATLFDD GPGYAPVGTP LTITVYARGN LAQPVVLTVA SNKGGTFSKT | 480 |
RLTIPAGANG QDSFTYTPAA NLVATLTYIS DGQLAGQLPP PRKVFSLADP VAYAATSLAD | 540 |
AALAIIAKYS ACKWELADGH TDYMLGAPAA AGQVVRAVSD SGYGSSPGNA MEMINWINKD | 600 |
NGAAGPMSLP VMRVTNGKKN SDHSVPESFG FWCKKSARMA GVQPNPRNRV PYNIEDAHFA | 660 |
IAALSVPASN NTGVAFQASK TEDLQLSELG FTNGQPRARW IDAKGLTVQL LAPSKLAVNT | 720 |
PAVLALTSVA GTQKLRINSA ELASGAATFA PSAFSQMLMG CGYVSYYPRE GFRGNLYAVI | 780 |
AGKGAPTAAE LAVLERYLAS TAGMTL | 806 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.