CAZyme3D

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Entry ID

Information for CAZyme ID: QGH64108.1

Basic Information

GenBank IDQGH64108.1
FamilyGH32
Sequence Length480
UniProt IDA0A5Q2VI33(100,100)Download
Average pLDDT?96.76
CAZy50 ID64075
CAZy50 RepNo, WEI57568.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28151
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia proteamaculans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNALAQADH  AVEALRAQRQ  DLYYPRFHLA  PAAGWINDPN  GLVCINGVYH  AFYQHHPYDQ60
NWGPMHWGHA  TSRDLAHWQH  QPIALAPGDD  YDKDGCFSGC  AVDDNGVLTL  LYTGHVWLGK120
AGDDDQVREV  QCLATSEDGI  HFVKHGPVLL  PPEGIQHFRD  PKVWRAGDCW  WMVVGAKENG180
LGQARLYRSS  DLRDWQFDRV  LSGAQTLSQG  FMWECPDFFP  LGEKQVLLFS  PQGLAAQGYR240
NRNRFQSGYL  LGHWQPGEDF  GVTQPFCELD  SGHDFYAPQS  FTAADGRRML  FAWMDMWESP300
MPSKAHGWAG  ALTLPRELTL  ATDGNVLMNP  ARELTALRGQ  QHSFAAVTLS  NQRQALDGEV360
QELMLTLNLA  NSNAERYGIT  VGNAARLYVD  NQAHRLVLER  LSEDPGLCGC  RSVPLPEGDE420
LSLRVFIDRS  SLEVFVNQGV  ACMTSRIYPA  DGQRGVSLFA  EGGQAQFAAS  QGWELESIWD480
480

Predicted 3D structure by AlphaFold2 with pLDDT = 96.76 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(28-328)

MKNALAQADH  AVEALRAQRQ  DLYYPRFHLA  PAAGWINDPN  GLVCINGVYH  AFYQHHPYDQ60
NWGPMHWGHA  TSRDLAHWQH  QPIALAPGDD  YDKDGCFSGC  AVDDNGVLTL  LYTGHVWLGK120
AGDDDQVREV  QCLATSEDGI  HFVKHGPVLL  PPEGIQHFRD  PKVWRAGDCW  WMVVGAKENG180
LGQARLYRSS  DLRDWQFDRV  LSGAQTLSQG  FMWECPDFFP  LGEKQVLLFS  PQGLAAQGYR240
NRNRFQSGYL  LGHWQPGEDF  GVTQPFCELD  SGHDFYAPQS  FTAADGRRML  FAWMDMWESP300
MPSKAHGWAG  ALTLPRELTL  ATDGNVLMNP  ARELTALRGQ  QHSFAAVTLS  NQRQALDGEV360
QELMLTLNLA  NSNAERYGIT  VGNAARLYVD  NQAHRLVLER  LSEDPGLCGC  RSVPLPEGDE420
LSLRVFIDRS  SLEVFVNQGV  ACMTSRIYPA  DGQRGVSLFA  EGGQAQFAAS  QGWELESIWD480
480

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help