CAZyme3D

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Entry ID

Information for CAZyme ID: QGG54517.1

Basic Information

GenBank IDQGG54517.1
FamilyCBM61, GH53
Sequence Length1224
UniProt IDA0A5Q2NJZ1(100,100)Download
Average pLDDT?82.89
CAZy50 ID5796
CAZy50 RepNo, QJC50504.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2660554
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. B01

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHTKLLRRLG  AAMLALVIGL  AGLGLPAGGA  VADAAASSDP  DGFIKGVDIS  TLQALEDKGV60
AFYDDGTERD  LLAILKEHGV  NYVRLRLWND  PVQADGYNDK  AHLIEMAKRV  KAAGMGLLVD120
FHYSDFWADP  GQQVKPAAWA  SLGFDELKAA  LYGYTREVMD  ELLAEGAYPD  MVQIGNEINS180
GMLLPDGSTS  RFAQLAQLLS  EGVRAVRETT  PAGHETKIML  HLAEGGSNAK  FRTFFDQARQ240
QGIDYDVIGL  SYYPYWHGTF  QELKSNMDNL  AARYGKEVVV  AETAYPYTLE  DADGHGNIAG300
EAQTKLTGFE  ASVASQKLVT  ELILNTVAHV  QGGKGLGVFY  WEPAWLAGVG  WKAGEGNAWE360
NQAMFDFDGN  ALESLDAFRF  VPGDLDDIKP  LLVYPSLDVT  ASAGSAPELP  AEAEVLLSEG420
SIEKRAVVWD  EPADPEQWKV  PGTYALQGSV  QGVDAAMRAA  VTVKVVDNPN  LVRNPGFEQD480
GLAGWTLSGT  EGAAKLSKEA  GNAHSGGHSV  NYYYGTEYGY  RISQTVTGLE  NGTYRLSAWA540
SGGGGETKLR  LFAEGYGGDP  LGADAVNAGW  NVWKPYAVEE  IEVTNGQVTI  GFDVEAPGGT600
WGYLDDFELV  KAPEKNPVQN  PGFESGDLTG  WTLGGTAGAG  KVENNAANAH  AGTHAFNYWY660
EDPYRFTLTQ  IVSQLPKGVY  ELTAAASGGG  GETKLQLYAE  TGIGSRWNAD  IVNTGWNVWK720
EYKVSGIEVA  NGQVTIGFDV  EAPGAAWGYF  DDIRLTRTGD  LPGTGEPPAT  GEPPATGEPP780
ATGEPPATGQ  PPATGGPPAT  GEPPATGEPP  ATGQPPATGE  PPATGQPPAT  PTPTPTPERT840
PAPTATPAPS  AAASPTPSAG  SGIVAVQAGQ  LSGDAGAAAV  LKLDGAATVR  LGAELKPRLA900
DGLRLELPGL  SAELSGDELR  QLWQQAGDAP  LSIRLSAADG  VGEQLAPLQQ  PGSRAYAAAG960
GSVELAIGSI  AADGRELPLE  AASIRLKLSA  AAGFDPERSG  IFRLDANGAP  AYQLGSRLAG1020
GDWTADVRSA  GRYAVLELSV  AYADVPAGHW  AQVGIASLSA  KGIVQGAGAA  GFLPAKSVSR1080
AELAAMLVRA  LGLSASGSAA  AGFADVSADA  WYAGAVSAAL  DAGILRGQAD  GIAAPQALLS1140
REQMAAMLVR  AAAAAGKPLE  AAAGDRPAAA  DAAAIGAWAA  PSVAAAYEAG  LLQGDANGAF1200
RPQAELTRAE  AAAAVQRLLK  LLQA1224

Predicted 3D structure by AlphaFold2 with pLDDT = 82.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH53(44-378)+CBM61(470-609)+CBM61(615-755)+SLH(1043-1082)+SLH(1103-1142)+SLH(1171-1211)

MHTKLLRRLG  AAMLALVIGL  AGLGLPAGGA  VADAAASSDP  DGFIKGVDIS  TLQALEDKGV60
AFYDDGTERD  LLAILKEHGV  NYVRLRLWND  PVQADGYNDK  AHLIEMAKRV  KAAGMGLLVD120
FHYSDFWADP  GQQVKPAAWA  SLGFDELKAA  LYGYTREVMD  ELLAEGAYPD  MVQIGNEINS180
GMLLPDGSTS  RFAQLAQLLS  EGVRAVRETT  PAGHETKIML  HLAEGGSNAK  FRTFFDQARQ240
QGIDYDVIGL  SYYPYWHGTF  QELKSNMDNL  AARYGKEVVV  AETAYPYTLE  DADGHGNIAG300
EAQTKLTGFE  ASVASQKLVT  ELILNTVAHV  QGGKGLGVFY  WEPAWLAGVG  WKAGEGNAWE360
NQAMFDFDGN  ALESLDAFRF  VPGDLDDIKP  LLVYPSLDVT  ASAGSAPELP  AEAEVLLSEG420
SIEKRAVVWD  EPADPEQWKV  PGTYALQGSV  QGVDAAMRAA  VTVKVVDNPN  LVRNPGFEQD480
GLAGWTLSGT  EGAAKLSKEA  GNAHSGGHSV  NYYYGTEYGY  RISQTVTGLE  NGTYRLSAWA540
SGGGGETKLR  LFAEGYGGDP  LGADAVNAGW  NVWKPYAVEE  IEVTNGQVTI  GFDVEAPGGT600
WGYLDDFELV  KAPEKNPVQN  PGFESGDLTG  WTLGGTAGAG  KVENNAANAH  AGTHAFNYWY660
EDPYRFTLTQ  IVSQLPKGVY  ELTAAASGGG  GETKLQLYAE  TGIGSRWNAD  IVNTGWNVWK720
EYKVSGIEVA  NGQVTIGFDV  EAPGAAWGYF  DDIRLTRTGD  LPGTGEPPAT  GEPPATGEPP780
ATGEPPATGQ  PPATGGPPAT  GEPPATGEPP  ATGQPPATGE  PPATGQPPAT  PTPTPTPERT840
PAPTATPAPS  AAASPTPSAG  SGIVAVQAGQ  LSGDAGAAAV  LKLDGAATVR  LGAELKPRLA900
DGLRLELPGL  SAELSGDELR  QLWQQAGDAP  LSIRLSAADG  VGEQLAPLQQ  PGSRAYAAAG960
GSVELAIGSI  AADGRELPLE  AASIRLKLSA  AAGFDPERSG  IFRLDANGAP  AYQLGSRLAG1020
GDWTADVRSA  GRYAVLELSV  AYADVPAGHW  AQVGIASLSA  KGIVQGAGAA  GFLPAKSVSR1080
AELAAMLVRA  LGLSASGSAA  AGFADVSADA  WYAGAVSAAL  DAGILRGQAD  GIAAPQALLS1140
REQMAAMLVR  AAAAAGKPLE  AAAGDRPAAA  DAAAIGAWAA  PSVAAAYEAG  LLQGDANGAF1200
RPQAELTRAE  AAAAVQRLLK  LLQA1224

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help