CAZyme3D

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Entry ID

Information for CAZyme ID: QGA11069.1

Basic Information

GenBank IDQGA11069.1
FamilyGT20
Sequence Length477
UniProt IDA0A5Q0P1T4(100,100)Download
Average pLDDT?89.12
CAZy50 ID71694
CAZy50 RepNo, QQN38059.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2662362
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderMoraxellales
FamilyMoraxellaceae
GenusAcinetobacter
SpeciesAcinetobacter wanghuae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKLIVLSNR  VSLPHPDSQQ  AGGLAVALED  ALNGVGGIWM  GWNGEQSTEK  QDTFDIIHEK60
NVEYHTCALS  EAEYQGYYCG  FANGVLWPLM  HEQKKYIEFK  AHEYQIYQDV  NLKFAQHLNK120
IASSEDVIWI  HDYHFLSVAH  YCRQLGMKNR  IGFFLHIPFP  ERTQWKSVKP  YQELAQHLAQ180
YDLLGLQTDY  DQTYCFDFLR  QTLGLKAHDA  NTLSDQTRQI  KINCYPIGVH  PTALQKRAAD240
SIDVALPFSD  LNNPNIQNII  SVDRIDYSKG  LLEKITAFDA  FYKHYPDMKN  QVRQLQIACP300
CRLDVDTYRS  LYDTFKAKVD  QLNQKYAESE  SPVFSCSFEA  IAHHELMHLY  RHADICWVNS360
IRDGMNLVAK  EYIAAQDPID  PGVLILSKYA  GAAEHMPEAI  IVDPFNVKSM  MKALNQAIHM420
PPSERLARYK  LLFQGLKDFD  IIQWRNHFIG  DLNRSGQSVI  YLPRNKAARY  DAINLSI477

Predicted 3D structure by AlphaFold2 with pLDDT = 89.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT20(3-454)

MSKLIVLSNR  VSLPHPDSQQ  AGGLAVALED  ALNGVGGIWM  GWNGEQSTEK  QDTFDIIHEK60
NVEYHTCALS  EAEYQGYYCG  FANGVLWPLM  HEQKKYIEFK  AHEYQIYQDV  NLKFAQHLNK120
IASSEDVIWI  HDYHFLSVAH  YCRQLGMKNR  IGFFLHIPFP  ERTQWKSVKP  YQELAQHLAQ180
YDLLGLQTDY  DQTYCFDFLR  QTLGLKAHDA  NTLSDQTRQI  KINCYPIGVH  PTALQKRAAD240
SIDVALPFSD  LNNPNIQNII  SVDRIDYSKG  LLEKITAFDA  FYKHYPDMKN  QVRQLQIACP300
CRLDVDTYRS  LYDTFKAKVD  QLNQKYAESE  SPVFSCSFEA  IAHHELMHLY  RHADICWVNS360
IRDGMNLVAK  EYIAAQDPID  PGVLILSKYA  GAAEHMPEAI  IVDPFNVKSM  MKALNQAIHM420
PPSERLARYK  LLFQGLKDFD  IIQWRNHFIG  DLNRSGQSVI  YLPRNKAARY  DAINLSI477

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help

qseqidqlensseqidpidentevaluelengthqstartqendqcovhspscovhsp
QGA11069.1477QQN38059.152.61.49e-173454145294.893.2