CAZyme3D

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Entry ID

Information for CAZyme ID: QGA06670.1

Basic Information

GenBank IDQGA06670.1
FamilyGH16
Sequence Length554
UniProt IDA0A5Q0NQW4(100,100)Download
Average pLDDT?85.77
CAZy50 ID56265
CAZy50 RepNo, QGA06671.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2662361
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. dk884

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDQRTTLPAH  PVATRSRRRL  LPLLTAGALA  VPLGAALASG  TTPGTAAAST  SASSAPTNDA60
ASLERRLRDP  RIEESSGLAR  STYPRSLLWT  HNDSGDRPRL  FAIGPRGATR  AVLRLAGAEA120
QDWEDIAAGP  DHTVWVGDIG  DNDAAREQIS  VYRIREPRTL  TSTRVRATRF  RLAYPDGPHD180
AETLLVRPRS  GRVLLVTKSD  DGAGVYRAPR  RLRADRVNRL  TRVADAPAGV  TAGSFSPDGG240
FLVLGTEDEA  YGYRKVGGTA  TPIALPARRQ  GESVAVRRGR  RAIVVGSEGV  HSPVYRVPVP300
AALRAEGTRA  TADRSPAEVE  GWALDLDENF  DELDPARWNV  RDRTYNSNEH  SYLIADNTSV360
RDGALVIEAR  PESAGGRQYT  SGYVDTNRRY  SLPDTFRAEV  RARVPMEQGL  WAAPLWFRPT420
DGSAGEIDLI  ETYGRESARP  LVHQTIHTGY  GLLHRQSALT  FPYARLGDPA  GTGWHTYVVE480
KTPGQIVMSV  DGVTTATWRS  GDPRWFDRFY  EAGKRWNLRI  NLQVGGSWGG  LPDASTDWSQ540
ASMAVDYLRT  WVPE554

Predicted 3D structure by AlphaFold2 with pLDDT = 85.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_3(329-551)

MDQRTTLPAH  PVATRSRRRL  LPLLTAGALA  VPLGAALASG  TTPGTAAAST  SASSAPTNDA60
ASLERRLRDP  RIEESSGLAR  STYPRSLLWT  HNDSGDRPRL  FAIGPRGATR  AVLRLAGAEA120
QDWEDIAAGP  DHTVWVGDIG  DNDAAREQIS  VYRIREPRTL  TSTRVRATRF  RLAYPDGPHD180
AETLLVRPRS  GRVLLVTKSD  DGAGVYRAPR  RLRADRVNRL  TRVADAPAGV  TAGSFSPDGG240
FLVLGTEDEA  YGYRKVGGTA  TPIALPARRQ  GESVAVRRGR  RAIVVGSEGV  HSPVYRVPVP300
AALRAEGTRA  TADRSPAEVE  GWALDLDENF  DELDPARWNV  RDRTYNSNEH  SYLIADNTSV360
RDGALVIEAR  PESAGGRQYT  SGYVDTNRRY  SLPDTFRAEV  RARVPMEQGL  WAAPLWFRPT420
DGSAGEIDLI  ETYGRESARP  LVHQTIHTGY  GLLHRQSALT  FPYARLGDPA  GTGWHTYVVE480
KTPGQIVMSV  DGVTTATWRS  GDPRWFDRFY  EAGKRWNLRI  NLQVGGSWGG  LPDASTDWSQ540
ASMAVDYLRT  WVPE554

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help