Information for CAZyme ID: QGA06670.1
Basic Information
GenBank ID | QGA06670.1 |
Family | GH16 |
Sequence Length | 554 |
UniProt ID | A0A5Q0NQW4(100,100)![]() |
Average pLDDT? | 85.77 |
CAZy50 ID | 56265 |
CAZy50 Rep | No, QGA06671.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2662361 |
Kingdom | Bacteria |
Phylum | Actinomycetota |
Class | Actinomycetes |
Order | Propionibacteriales |
Family | Nocardioidaceae |
Genus | Nocardioides |
Species | Nocardioides sp. dk884 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MDQRTTLPAH PVATRSRRRL LPLLTAGALA VPLGAALASG TTPGTAAAST SASSAPTNDA | 60 |
ASLERRLRDP RIEESSGLAR STYPRSLLWT HNDSGDRPRL FAIGPRGATR AVLRLAGAEA | 120 |
QDWEDIAAGP DHTVWVGDIG DNDAAREQIS VYRIREPRTL TSTRVRATRF RLAYPDGPHD | 180 |
AETLLVRPRS GRVLLVTKSD DGAGVYRAPR RLRADRVNRL TRVADAPAGV TAGSFSPDGG | 240 |
FLVLGTEDEA YGYRKVGGTA TPIALPARRQ GESVAVRRGR RAIVVGSEGV HSPVYRVPVP | 300 |
AALRAEGTRA TADRSPAEVE GWALDLDENF DELDPARWNV RDRTYNSNEH SYLIADNTSV | 360 |
RDGALVIEAR PESAGGRQYT SGYVDTNRRY SLPDTFRAEV RARVPMEQGL WAAPLWFRPT | 420 |
DGSAGEIDLI ETYGRESARP LVHQTIHTGY GLLHRQSALT FPYARLGDPA GTGWHTYVVE | 480 |
KTPGQIVMSV DGVTTATWRS GDPRWFDRFY EAGKRWNLRI NLQVGGSWGG LPDASTDWSQ | 540 |
ASMAVDYLRT WVPE | 554 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.77 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH16_3(329-551)
MDQRTTLPAH PVATRSRRRL LPLLTAGALA VPLGAALASG TTPGTAAAST SASSAPTNDA | 60 |
ASLERRLRDP RIEESSGLAR STYPRSLLWT HNDSGDRPRL FAIGPRGATR AVLRLAGAEA | 120 |
QDWEDIAAGP DHTVWVGDIG DNDAAREQIS VYRIREPRTL TSTRVRATRF RLAYPDGPHD | 180 |
AETLLVRPRS GRVLLVTKSD DGAGVYRAPR RLRADRVNRL TRVADAPAGV TAGSFSPDGG | 240 |
FLVLGTEDEA YGYRKVGGTA TPIALPARRQ GESVAVRRGR RAIVVGSEGV HSPVYRVPVP | 300 |
AALRAEGTRA TADRSPAEVE GWALDLDENF DELDPARWNV RDRTYNSNEH SYLIADNTSV | 360 |
RDGALVIEAR PESAGGRQYT SGYVDTNRRY SLPDTFRAEV RARVPMEQGL WAAPLWFRPT | 420 |
DGSAGEIDLI ETYGRESARP LVHQTIHTGY GLLHRQSALT FPYARLGDPA GTGWHTYVVE | 480 |
KTPGQIVMSV DGVTTATWRS GDPRWFDRFY EAGKRWNLRI NLQVGGSWGG LPDASTDWSQ | 540 |
ASMAVDYLRT WVPE | 554 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.