CAZyme3D

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Entry ID

Information for CAZyme ID: QFX83760.1

Basic Information

GenBank IDQFX83760.1
FamilyPL1_5
Sequence Length519
UniProt IDA0A5P9WQ95(100,100)Download
Average pLDDT?89.11
CAZy50 ID5857
CAZy50 RepNo, QHQ40380.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2662065
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. SYP-A7193

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRPVALRLQ  AALGTLALAA  AAGVVLTMPE  TASAAAGGAT  GYATQNGGTT  GGAGGQTVRA60
TTGTAIHQAL  CGRASSSTPI  VIEVEGTINH  GNTSKVSGDS  CNTAADKIEL  KQVSNITIVG120
VGSGAVFDQL  GIHIRESSNI  VIQNVTVRNV  KKSGSPTSNG  GDAIGMESDV  RNVWVDHSTL180
EASGGESEGY  DGLFDMKDNT  QYVTLSYSVL  RNSGRGGLIG  SSESDRSNGY  VTFHHNLYEN240
IDSRAPLLRG  GVAHMYNNHY  VSLNKSGINS  RAGAKAKVDN  NYFEDSKDVL  GTFYTDEAGS300
WQVSGNIFDN  VTWSEPGGDN  NPAGPDPQSN  TTVSIPYSYT  LDDASCVPSV  VSGTAGANKG360
LKVSDGSCTP  QSPDPTDPTD  PDPTDPDPTD  PDPTDPPSGT  NLSIGAGSDG  SSKASGTSYG420
NVRDGDMSTY  WSPSGTTGSV  SVKWSSARTV  AKINIREASG  SQGTIGSYRV  LNHDTGAVLA480
SGSGAGVIAF  SPVSLEKITF  EITGASGTPK  VAEFETYAG519

Predicted 3D structure by AlphaFold2 with pLDDT = 89.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL1_5(104-285)+CBM32(410-476)

MRRPVALRLQ  AALGTLALAA  AAGVVLTMPE  TASAAAGGAT  GYATQNGGTT  GGAGGQTVRA60
TTGTAIHQAL  CGRASSSTPI  VIEVEGTINH  GNTSKVSGDS  CNTAADKIEL  KQVSNITIVG120
VGSGAVFDQL  GIHIRESSNI  VIQNVTVRNV  KKSGSPTSNG  GDAIGMESDV  RNVWVDHSTL180
EASGGESEGY  DGLFDMKDNT  QYVTLSYSVL  RNSGRGGLIG  SSESDRSNGY  VTFHHNLYEN240
IDSRAPLLRG  GVAHMYNNHY  VSLNKSGINS  RAGAKAKVDN  NYFEDSKDVL  GTFYTDEAGS300
WQVSGNIFDN  VTWSEPGGDN  NPAGPDPQSN  TTVSIPYSYT  LDDASCVPSV  VSGTAGANKG360
LKVSDGSCTP  QSPDPTDPTD  PDPTDPDPTD  PDPTDPPSGT  NLSIGAGSDG  SSKASGTSYG420
NVRDGDMSTY  WSPSGTTGSV  SVKWSSARTV  AKINIREASG  SQGTIGSYRV  LNHDTGAVLA480
SGSGAGVIAF  SPVSLEKITF  EITGASGTPK  VAEFETYAG519

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help