CAZyme3D

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Entry ID

Information for CAZyme ID: QFU32118.1

Basic Information

GenBank IDQFU32118.1
FamilyPL10_2
Sequence Length549
UniProt IDA0A5P9KQ69(100,100)Download
Average pLDDT?92.39
CAZy50 ID56696
CAZy50 RepNo, AAK24010.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2560058
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusBrevundimonas
SpeciesBrevundimonas sp. Bb-A

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHAPSMSRRA  VLAAGAAATF  VAASAPALAG  AASAPQRDAI  LAGMKRAARF  MTDEAAVEGG60
YVWQYLPDFS  RRWGELEASP  TMIWVQPPGT  ATMGHLFLDA  YHATGDDFYY  EAAKSAADAL120
VRGQHPAGGW  NYVIDTAGEA  SLRRWYDTVG  KNAWRLEEFH  RYYGNATFDD  AGTAEASQLL180
LRLYLEKRDR  KYLAPLNKAI  DFVLDSQYPN  GGWPQRYPFV  QNGGVHGHAD  YTPYITFNDD240
VAGENLEFLI  YAWHGLARNG  RGDPRILDAI  NRGMDIFVRT  QQPQPQPAWG  LQHFPDTLKP300
AGARTIEPQA  LVTHATGTNI  KSMLGFYRLT  GDRKFLDRLP  EALDWLDQVA  TKPPLNTPGR360
THPTFILEGA  NTPIYIHRRG  SNVANGQYYA  DDNPENLIVH  YGSFRNVDTP  ALRAEYARLS420
ALPVEAVTQG  SPLKARPGSL  RLPTYFTLQD  VDVWDMSSEA  KRPSPVSESR  VAEVLAGLNA480
RGYWPTPLTT  TSNPYRGDSP  TAVTGGEYQM  TRVGDVWDTS  PYRTDYPVEG  VSTSVFIRNM540
GDLIQALVA549

Predicted 3D structure by AlphaFold2 with pLDDT = 92.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_2(124-403)

MHAPSMSRRA  VLAAGAAATF  VAASAPALAG  AASAPQRDAI  LAGMKRAARF  MTDEAAVEGG60
YVWQYLPDFS  RRWGELEASP  TMIWVQPPGT  ATMGHLFLDA  YHATGDDFYY  EAAKSAADAL120
VRGQHPAGGW  NYVIDTAGEA  SLRRWYDTVG  KNAWRLEEFH  RYYGNATFDD  AGTAEASQLL180
LRLYLEKRDR  KYLAPLNKAI  DFVLDSQYPN  GGWPQRYPFV  QNGGVHGHAD  YTPYITFNDD240
VAGENLEFLI  YAWHGLARNG  RGDPRILDAI  NRGMDIFVRT  QQPQPQPAWG  LQHFPDTLKP300
AGARTIEPQA  LVTHATGTNI  KSMLGFYRLT  GDRKFLDRLP  EALDWLDQVA  TKPPLNTPGR360
THPTFILEGA  NTPIYIHRRG  SNVANGQYYA  DDNPENLIVH  YGSFRNVDTP  ALRAEYARLS420
ALPVEAVTQG  SPLKARPGSL  RLPTYFTLQD  VDVWDMSSEA  KRPSPVSESR  VAEVLAGLNA480
RGYWPTPLTT  TSNPYRGDSP  TAVTGGEYQM  TRVGDVWDTS  PYRTDYPVEG  VSTSVFIRNM540
GDLIQALVA549

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help