CAZyme3D

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Entry ID

Information for CAZyme ID: QFR38658.1

Basic Information

GenBank IDQFR38658.1
FamilyGT4
Sequence Length372
UniProt IDA0A5P8NC43(100,100)Download
Average pLDDT?95.18
CAZy50 ID112888
CAZy50 RepNo, ATU05914.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1862133
KingdomBacteria
PhylumCandidatus Gracilibacteria
Class
Order
Family
Genus
SpeciesCandidatus Gracilibacteria bacterium 28_42_T64

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIAILHEML  IKFGGAEKVV  EKLLQIFPKA  DLFTLIYDET  KLGESFPKER  IHPQVYDLKT60
QKIYKLFKNQ  RFCLPFMASS  VESLDFSKYD  LVIASSSGFA  HGAITKPETQ  FIAYYHSPAR120
YMWDWTNEYK  KDIGWDSGIK  GFILNKLFLK  LRQWDYIASN  RVDTIIANSE  NTAGRIQKYY180
RKDSHILYPP  VEVKRFQSLR  EQKTNYKNYY  IIISALTEFK  KIEIAIEAFN  KMPETNLLVV240
GSGNYKTDLE  NKVKISNIDF  AGAKYGDELV  ALVQSSKGLI  FPGEEDFGIV  PIEVMAAGKP300
VFAYRGGGLL  ETVSEGITGE  FFSEKDGSDF  IENFLKFDIN  NGNKVYSPEK  CRKQAEKFSE360
DIFEKGLKNL  IK372

Predicted 3D structure by AlphaFold2 with pLDDT = 95.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(205-337)

MKIAILHEML  IKFGGAEKVV  EKLLQIFPKA  DLFTLIYDET  KLGESFPKER  IHPQVYDLKT60
QKIYKLFKNQ  RFCLPFMASS  VESLDFSKYD  LVIASSSGFA  HGAITKPETQ  FIAYYHSPAR120
YMWDWTNEYK  KDIGWDSGIK  GFILNKLFLK  LRQWDYIASN  RVDTIIANSE  NTAGRIQKYY180
RKDSHILYPP  VEVKRFQSLR  EQKTNYKNYY  IIISALTEFK  KIEIAIEAFN  KMPETNLLVV240
GSGNYKTDLE  NKVKISNIDF  AGAKYGDELV  ALVQSSKGLI  FPGEEDFGIV  PIEVMAAGKP300
VFAYRGGGLL  ETVSEGITGE  FFSEKDGSDF  IENFLKFDIN  NGNKVYSPEK  CRKQAEKFSE360
DIFEKGLKNL  IK372

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help