CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QFR24656.1

Basic Information

GenBank IDQFR24656.1
FamilyGH50
Sequence Length658
UniProt IDA0A510TXK2(100,100)Download
Average pLDDT?93.68
CAZy50 ID44000
CAZy50 RepNo, QFR63110.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID304207
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusSchleiferilactobacillus
SpeciesSchleiferilactobacillus harbinensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAQVMIHADD  VVGQALFAEE  TGGFSLTDRL  GGGIDVTAFA  RQPERYLTAV  LRPESGDSMA60
LSLLVYVTGE  KSPAMTIRFG  ILPTVRSTMV  LDKEWFKGAV  LFPDAPVGGL  KVVCHGHAVA120
LADITKLELV  TLPTAAPVTL  HITNLHYTDT  YPRIGLDQTV  LVDQFGQTIA  KEWPEKIHSE180
GELQERLRAA  ADQAPQIPVS  SWDKYGGDMT  RQLTKGTGFF  ATQKTDDRWY  LVDPVGNAFF240
SLGVDGVGAA  NDCRIEGIHR  YLDWLPEHSD  PEYTHFFATG  HTPAGKPVES  FAFAQANLQR300
AFGPDWQARW  QDMMLHQLRG  LGINTIGNWS  DRALIRRQAM  PYVTMLPQFP  DTTAHIFRDF360
PDVFAPEYTE  AAQQSAQALA  ARKDDPWLIG  YFLRNEPSWA  FVDHLNLGAE  VLANPTRTAT420
KERLVADLQD  QYATIAALNT  AWHTDFTDFA  ALYNTPTVPP  AAADDLRAFS  RKMVKQYVSV480
PAKACRAVDP  QHLILGMRWA  WVSDPDLIAG  WEDCDVFSIN  CYAMDPTKEL  DQVRDLGVDQ540
PVMIGEFHFG  ALDAGPTATG  LEAVSNQNDR  GTAFRHYCEH  VAAHPNGIGC  HYFQCYDQFA600
LGRFDGENYN  IGLFDICSQP  YQALGAAIKE  TARHIDDINA  GEAQGTAPLV  TELPMIAY658

Predicted 3D structure by AlphaFold2 with pLDDT = 93.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(117-633)

MAQVMIHADD  VVGQALFAEE  TGGFSLTDRL  GGGIDVTAFA  RQPERYLTAV  LRPESGDSMA60
LSLLVYVTGE  KSPAMTIRFG  ILPTVRSTMV  LDKEWFKGAV  LFPDAPVGGL  KVVCHGHAVA120
LADITKLELV  TLPTAAPVTL  HITNLHYTDT  YPRIGLDQTV  LVDQFGQTIA  KEWPEKIHSE180
GELQERLRAA  ADQAPQIPVS  SWDKYGGDMT  RQLTKGTGFF  ATQKTDDRWY  LVDPVGNAFF240
SLGVDGVGAA  NDCRIEGIHR  YLDWLPEHSD  PEYTHFFATG  HTPAGKPVES  FAFAQANLQR300
AFGPDWQARW  QDMMLHQLRG  LGINTIGNWS  DRALIRRQAM  PYVTMLPQFP  DTTAHIFRDF360
PDVFAPEYTE  AAQQSAQALA  ARKDDPWLIG  YFLRNEPSWA  FVDHLNLGAE  VLANPTRTAT420
KERLVADLQD  QYATIAALNT  AWHTDFTDFA  ALYNTPTVPP  AAADDLRAFS  RKMVKQYVSV480
PAKACRAVDP  QHLILGMRWA  WVSDPDLIAG  WEDCDVFSIN  CYAMDPTKEL  DQVRDLGVDQ540
PVMIGEFHFG  ALDAGPTATG  LEAVSNQNDR  GTAFRHYCEH  VAAHPNGIGC  HYFQCYDQFA600
LGRFDGENYN  IGLFDICSQP  YQALGAAIKE  TARHIDDINA  GEAQGTAPLV  TELPMIAY658

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help