CAZyme3D

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Entry ID

Information for CAZyme ID: QFQ31276.2

Basic Information

GenBank IDQFQ31276.2
FamilyGT4
Sequence Length400
UniProt IDA0A5P8FNW2(100,100)Download
Average pLDDT?90.97
CAZy50 ID76237
CAZy50 RepNo, QAY61966.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID262209
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyIntrasporangiaceae
GenusJanibacter
SpeciesJanibacter melonis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPRVLLIAPT  CDGQDVGESW  VSAQWARHLA  QRCDTTLVTY  HKRTATPAAE  QLDGLRVVEW60
VEPPLLGRAE  RLNSIAKPGY  VAFYRRARRW  VADALAAGEH  FDLAFQPTPV  AMRYPSPVVG120
LGIPTIVGPV  GGGLADPPGF  SADGTSEPWY  YRLRELDGMR  LRRDRLLRRT  FEEADCVLGI180
ADYVAEALSG  LTLKRFETMP  ETAVAQIPEP  VERVAGPRVR  ALFAGRLVRS  KGVHELVDAL240
AATTAPVDLE  IAGVGPEEES  LRRQVAALGL  EDRVTFHGWV  ERPAMAELYR  RADIFAFPSY300
REPGGNAPLE  AMSWGLPLVV  AARGGPGAFT  TDECAIRLPV  ISPERFRTDI  TAALDRLGGD360
AALRRAMGEA  GRRHVAATAT  WPAKVDRLLA  LGAELAADRR  400

Predicted 3D structure by AlphaFold2 with pLDDT = 90.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(222-334)

MPRVLLIAPT  CDGQDVGESW  VSAQWARHLA  QRCDTTLVTY  HKRTATPAAE  QLDGLRVVEW60
VEPPLLGRAE  RLNSIAKPGY  VAFYRRARRW  VADALAAGEH  FDLAFQPTPV  AMRYPSPVVG120
LGIPTIVGPV  GGGLADPPGF  SADGTSEPWY  YRLRELDGMR  LRRDRLLRRT  FEEADCVLGI180
ADYVAEALSG  LTLKRFETMP  ETAVAQIPEP  VERVAGPRVR  ALFAGRLVRS  KGVHELVDAL240
AATTAPVDLE  IAGVGPEEES  LRRQVAALGL  EDRVTFHGWV  ERPAMAELYR  RADIFAFPSY300
REPGGNAPLE  AMSWGLPLVV  AARGGPGAFT  TDECAIRLPV  ISPERFRTDI  TAALDRLGGD360
AALRRAMGEA  GRRHVAATAT  WPAKVDRLLA  LGAELAADRR  400

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help