CAZyme3D

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Entry ID

Information for CAZyme ID: QFF97629.1

Basic Information

GenBank IDQFF97629.1
FamilyCBM50, GH18
Sequence Length419
UniProt IDA0A5J6SJ40(100,100)Download
Average pLDDT?96.89
CAZy50 ID88872
CAZy50 RepNo, AKP48925.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2283160
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusPsychrobacillus
SpeciesPsychrobacillus glaciei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFIYVVKMGD  SLFSIATKFQ  VTMDSIRITN  GLKTDSLVPG  QDLLIPTNMY  TVQPGDSLYS60
ISQMSFISVE  TLRLINGLHS  DTLAVGTMLY  LPPRTKYDAL  NLSYILPSTP  TKNKNMIQSA120
APINTFFGVF  EYHILADGSL  SSLDDRQLIR  VARENKVAPL  AVITNLTSTG  FNADLANQVL180
SSPQAKARLI  KNIYNLIKNK  NYAGVNIDFE  MLLEGQRDLY  TSFLHSLREK  LKPEGYYTSV240
AIPAKMNDKL  PYLKAYDYGG  IAAAVDLVVI  MAYDFHEATS  LPGPISPIKE  VRQTIEYALK300
HMKASKIILG  VQRYGYDWKM  HDNTVIDAHA  VSVSMAIETA  MKHQVPIQYS  KEDQQPFFQY360
RDDAGQKHIV  WFEDSRARAQ  KLKLVTDYHL  KGIGEWQLGF  KFAQSYLLVN  EFLKTHKVL419

Predicted 3D structure by AlphaFold2 with pLDDT = 96.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(4-46)+CBM50(50-92)+GH18(171-402)

MFIYVVKMGD  SLFSIATKFQ  VTMDSIRITN  GLKTDSLVPG  QDLLIPTNMY  TVQPGDSLYS60
ISQMSFISVE  TLRLINGLHS  DTLAVGTMLY  LPPRTKYDAL  NLSYILPSTP  TKNKNMIQSA120
APINTFFGVF  EYHILADGSL  SSLDDRQLIR  VARENKVAPL  AVITNLTSTG  FNADLANQVL180
SSPQAKARLI  KNIYNLIKNK  NYAGVNIDFE  MLLEGQRDLY  TSFLHSLREK  LKPEGYYTSV240
AIPAKMNDKL  PYLKAYDYGG  IAAAVDLVVI  MAYDFHEATS  LPGPISPIKE  VRQTIEYALK300
HMKASKIILG  VQRYGYDWKM  HDNTVIDAHA  VSVSMAIETA  MKHQVPIQYS  KEDQQPFFQY360
RDDAGQKHIV  WFEDSRARAQ  KLKLVTDYHL  KGIGEWQLGF  KFAQSYLLVN  EFLKTHKVL419

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help