CAZyme3D

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Entry ID

Information for CAZyme ID: QEY17637.1

Basic Information

GenBank IDQEY17637.1
FamilyGH16_25
Sequence Length334
UniProt IDA0A5J6PAC0(100,100)Download
Average pLDDT?79.33
CAZy50 ID68916
CAZy50 RepNo, QEY16471.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2303332
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusCellvibrio
SpeciesCellvibrio sp. KY-GH-1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRISIFLLA  LCASLAAGVT  TAKSYKGAEI  FSNQSYLYGR  YEMRMRVANA  SGVLSTFFTY60
KNGSEIGNTF  WEEIDIEVFG  KNNATQWQSN  VILGSSRPTL  HTEQVHTAPQ  SLADAYHTYV120
LEWTPDYVAW  FVDGVEVRRI  IGTSTVTSLT  NAQSLRFNIW  SSESAEWVGA  WNDSVLPVYQ180
FVNYIDYKTY  NATTKSFEAG  WRDDFDTFDT  SRWSKANWSF  DGNRVDFAPE  NALVKNGILV240
LALTKENAMG  YAGTPPADEP  ASSSSASSVA  SSSSVASSSA  ASSSMASSAP  ASSKAASSTA300
TTGSNSGGGG  GGGSIPLWGL  LALSGLLLAG  RGRK334

Predicted 3D structure by AlphaFold2 with pLDDT = 79.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_25(25-187)

MRRISIFLLA  LCASLAAGVT  TAKSYKGAEI  FSNQSYLYGR  YEMRMRVANA  SGVLSTFFTY60
KNGSEIGNTF  WEEIDIEVFG  KNNATQWQSN  VILGSSRPTL  HTEQVHTAPQ  SLADAYHTYV120
LEWTPDYVAW  FVDGVEVRRI  IGTSTVTSLT  NAQSLRFNIW  SSESAEWVGA  WNDSVLPVYQ180
FVNYIDYKTY  NATTKSFEAG  WRDDFDTFDT  SRWSKANWSF  DGNRVDFAPE  NALVKNGILV240
LALTKENAMG  YAGTPPADEP  ASSSSASSVA  SSSSVASSSA  ASSSMASSAP  ASSKAASSTA300
TTGSNSGGGG  GGGSIPLWGL  LALSGLLLAG  RGRK334

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help