CAZyme3D

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Entry ID

Information for CAZyme ID: QES39973.1

Basic Information

GenBank IDQES39973.1
FamilyGH5_19
Sequence Length633
UniProt IDA0A5P2CBS5(100,100)Download
Average pLDDT?92.28
CAZy50 ID46124
CAZy50 RepNo, ANB09958.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID54571
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces venezuelae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARERVSGGR  VTFADGALRR  DGRPFVSVGV  NYHPSPTGCD  YWREWDGDRI  DDDFRRMAAE60
GLNTVRFFVF  WADFEPKEGV  YDPTATDRLR  ELVRTAGRHG  LLCLPSLLTI  WMNGQRFDPP120
WRDGRDLWRD  ADLRERQRAF  VHHIAAGLRD  EPNVLAYDLG  DEVIHVDSGA  SASLGPDEVR180
AWWGMLASAI  RDADPDALVL  QANEPSAILG  GHAFRPEHAD  SLDMVGLHGF  PVWTPFHVES240
VAARKATAFV  PYLVRRGSAH  RPVYVDELGS  YGCDETTAAQ  YLRAAAHSVF  AAGAVGTAVW300
CWQDFTTERK  PYALRPNERR  VGLLDAAGGE  KPVLAEYREF  IRRVTGELAG  FRPLPAPVGV360
FVPEAEAQED  AGYLTPSGSD  APAAFYAHLL  LQQAHLPYEF  TGRDPELERH  ALVICPSARQ420
LSLPERRRLA  RYVTAGGVLL  YSTGSLLDAA  GDEELFGIRV  RDFTRAGDSH  AEFTWAGVRF480
PLRWDADPIP  VIDTAGAETL  AAFADGSPAL  TRHRLGAGSV  YYLNAPLEAQ  LNAPYRLGET540
DWHRLYEAVA  EDAGVRAPLT  ADDPSVETTV  LGRGDERCGV  VINHAPEPVD  TVLRRRTADG600
APECEKLLRL  EPKGVRLLFW  HGEGPARPGR  RQP633

Predicted 3D structure by AlphaFold2 with pLDDT = 92.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_19(28-305)

MARERVSGGR  VTFADGALRR  DGRPFVSVGV  NYHPSPTGCD  YWREWDGDRI  DDDFRRMAAE60
GLNTVRFFVF  WADFEPKEGV  YDPTATDRLR  ELVRTAGRHG  LLCLPSLLTI  WMNGQRFDPP120
WRDGRDLWRD  ADLRERQRAF  VHHIAAGLRD  EPNVLAYDLG  DEVIHVDSGA  SASLGPDEVR180
AWWGMLASAI  RDADPDALVL  QANEPSAILG  GHAFRPEHAD  SLDMVGLHGF  PVWTPFHVES240
VAARKATAFV  PYLVRRGSAH  RPVYVDELGS  YGCDETTAAQ  YLRAAAHSVF  AAGAVGTAVW300
CWQDFTTERK  PYALRPNERR  VGLLDAAGGE  KPVLAEYREF  IRRVTGELAG  FRPLPAPVGV360
FVPEAEAQED  AGYLTPSGSD  APAAFYAHLL  LQQAHLPYEF  TGRDPELERH  ALVICPSARQ420
LSLPERRRLA  RYVTAGGVLL  YSTGSLLDAA  GDEELFGIRV  RDFTRAGDSH  AEFTWAGVRF480
PLRWDADPIP  VIDTAGAETL  AAFADGSPAL  TRHRLGAGSV  YYLNAPLEAQ  LNAPYRLGET540
DWHRLYEAVA  EDAGVRAPLT  ADDPSVETTV  LGRGDERCGV  VINHAPEPVD  TVLRRRTADG600
APECEKLLRL  EPKGVRLLFW  HGEGPARPGR  RQP633

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help