CAZyme3D

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Entry ID

Information for CAZyme ID: QES18203.1

Basic Information

GenBank IDQES18203.1
FamilyPL1_5
Sequence Length526
UniProt IDA0A5P2AJ86(100,100)Download
Average pLDDT?88.36
CAZy50 ID5857
CAZy50 RepNo, QHQ40380.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID54571
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces venezuelae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRRVARRIQ  AALATLALAA  ATGAVLSAPS  ASAATGGATG  YATQNGGTTG  GAGGQTVRAT60
TGTAIHAALC  GRAASSTPIT  IEVEGTIDHG  NTAKVSGGSC  NTAAGVIELK  QISNVTIVGV120
GAGAVFDQLG  IHIRESSNIV  IQNVTVRNVK  KSGSPTSNGG  DAIGMESDVR  NVWVDHVTLE180
ASGGESEGFD  GLFDMKDNTQ  YVTLSYSVLR  NSGRGGLVGS  SETELSNSFI  TYHHNLYENL240
DSRVPLLRGG  TAHIYNNHYL  RINDSGINSR  AGARAKVDSN  YFEDSKDVLG  TFYTDAAGYW300
QVSGNTFDNV  TWSSPGTDNN  PAGPDPQSNT  TVTVPYAYTL  DAASCVPSVV  SRTAGAGKGL360
QVSDGACSPQ  TPNPTTPAPT  TPAPTTPAPT  TPAPTTPAPS  TSAPSGTNLS  IGAGSDGSGK420
ADGTSYGNVR  DGDTATYWSP  AGTTGYVSIK  WGAPTAVSGV  VVKEAAGATG  RIGSWRLLNA480
DTGAVLSSGS  GAGAVTFTRT  TLSKITFEIT  GSSATPQVAE  FETYAG526

Predicted 3D structure by AlphaFold2 with pLDDT = 88.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL1_5(103-284)+CBM32(418-509)

MRRRVARRIQ  AALATLALAA  ATGAVLSAPS  ASAATGGATG  YATQNGGTTG  GAGGQTVRAT60
TGTAIHAALC  GRAASSTPIT  IEVEGTIDHG  NTAKVSGGSC  NTAAGVIELK  QISNVTIVGV120
GAGAVFDQLG  IHIRESSNIV  IQNVTVRNVK  KSGSPTSNGG  DAIGMESDVR  NVWVDHVTLE180
ASGGESEGFD  GLFDMKDNTQ  YVTLSYSVLR  NSGRGGLVGS  SETELSNSFI  TYHHNLYENL240
DSRVPLLRGG  TAHIYNNHYL  RINDSGINSR  AGARAKVDSN  YFEDSKDVLG  TFYTDAAGYW300
QVSGNTFDNV  TWSSPGTDNN  PAGPDPQSNT  TVTVPYAYTL  DAASCVPSVV  SRTAGAGKGL360
QVSDGACSPQ  TPNPTTPAPT  TPAPTTPAPT  TPAPTTPAPS  TSAPSGTNLS  IGAGSDGSGK420
ADGTSYGNVR  DGDTATYWSP  AGTTGYVSIK  WGAPTAVSGV  VVKEAAGATG  RIGSWRLLNA480
DTGAVLSSGS  GAGAVTFTRT  TLSKITFEIT  GSSATPQVAE  FETYAG526

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help