CAZyme3D

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Entry ID

Information for CAZyme ID: QER86292.1

Basic Information

GenBank IDQER86292.1
FamilyGH18
Sequence Length412
UniProt IDA0A5P1YHI8(100,100)Download
Average pLDDT?91.56
CAZy50 ID28136
CAZy50 RepNo, DAA01336.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1932
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces tendae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPSPHRPRTL  RALVSAACAA  VLGAGLLAGV  GTSTATAATS  AQEAAAGSKI  VGYFTEWGTY60
DRKYYVKNIE  TSGSADRLTH  INYAFGNVTG  GKCAIGDSYA  ATERAYTAEE  SVDGVADTWD120
QPLRGTFNQL  RELKAEHPDL  KVIWSFGGWT  WSGGFGEAAK  DPAAFARSCL  DLVEDPRWAD180
VFDGIDIDWE  YPNACGATCD  TSGRDAYREL  MSALRTTFGP  DSLVTAAIPA  DATEGGKIDA240
ADYAGAAQYV  DWYNPMTYDF  FGAWDTAGPT  APHSPLTSYD  GIPKAEYNSA  ATLTKLTGLG300
VPADKLLLGI  GFYGRGWTGV  THGEPGGTAT  GPAPGTYEAG  IDDYKVLKDR  CPATGTVGGT360
AYAKCGEQWW  SYDTPATVAS  KTDWKNQQGL  GGTFFWELSG  DTADGELIKA  IR412

Predicted 3D structure by AlphaFold2 with pLDDT = 91.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(48-406)

MPSPHRPRTL  RALVSAACAA  VLGAGLLAGV  GTSTATAATS  AQEAAAGSKI  VGYFTEWGTY60
DRKYYVKNIE  TSGSADRLTH  INYAFGNVTG  GKCAIGDSYA  ATERAYTAEE  SVDGVADTWD120
QPLRGTFNQL  RELKAEHPDL  KVIWSFGGWT  WSGGFGEAAK  DPAAFARSCL  DLVEDPRWAD180
VFDGIDIDWE  YPNACGATCD  TSGRDAYREL  MSALRTTFGP  DSLVTAAIPA  DATEGGKIDA240
ADYAGAAQYV  DWYNPMTYDF  FGAWDTAGPT  APHSPLTSYD  GIPKAEYNSA  ATLTKLTGLG300
VPADKLLLGI  GFYGRGWTGV  THGEPGGTAT  GPAPGTYEAG  IDDYKVLKDR  CPATGTVGGT360
AYAKCGEQWW  SYDTPATVAS  KTDWKNQQGL  GGTFFWELSG  DTADGELIKA  IR412

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help