CAZyme3D

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Entry ID

Information for CAZyme ID: QEP98153.1

Basic Information

GenBank IDQEP98153.1
FamilyCBM50, GH23
Sequence Length455
UniProt IDA0A0M0PT29(100,100)Download
Average pLDDT?76.72
CAZy50 ID68708
CAZy50 RepNo, QKJ85951.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28901
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAKAILLAS  VLLVGCQTSQ  NTGNVQQHAQ  SLSAAGQGEA  GKFTSQARWM  DDGTSIAPDQ60
DLWAFIGDEL  KMGIPENSRI  REQKQKYLRN  KSYLHDVTLR  AEPYMYWIAG  QVKKRNMPME120
LVLLPIVESA  FDPHATSGAN  AAGIWQIIPS  TGRNYGLKQT  RNYDARRDVV  ASTTAALDMM180
QRLNKMFDGD  WLLTVAAYNS  GEGRVMRAIK  ANKARGKPTD  FWSLSLPRET  KLYVPKMLAL240
SEILKNSKRY  GVRLPTTDES  RALARVRLNS  PVEMAQVADM  AGMSISKLKT  FNAGVKGSTL300
GVSGPQYVMV  PKKHAEQLRE  SLASGEIDAV  QSQLIADNTP  LNSRSYKVRS  GDTLSGIASR360
LGVSTKDLQQ  WNNLRGSRLK  IGQSLTVGAG  SSAQRLANNS  DSITYRVRKG  DSLSSIARRH420
GVNIKDVMRW  NHDTDNLQPG  DQLTLFVKDN  STPDS455

Predicted 3D structure by AlphaFold2 with pLDDT = 76.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(104-247)+CBM50(346-387)+CBM50(405-445)

MKAKAILLAS  VLLVGCQTSQ  NTGNVQQHAQ  SLSAAGQGEA  GKFTSQARWM  DDGTSIAPDQ60
DLWAFIGDEL  KMGIPENSRI  REQKQKYLRN  KSYLHDVTLR  AEPYMYWIAG  QVKKRNMPME120
LVLLPIVESA  FDPHATSGAN  AAGIWQIIPS  TGRNYGLKQT  RNYDARRDVV  ASTTAALDMM180
QRLNKMFDGD  WLLTVAAYNS  GEGRVMRAIK  ANKARGKPTD  FWSLSLPRET  KLYVPKMLAL240
SEILKNSKRY  GVRLPTTDES  RALARVRLNS  PVEMAQVADM  AGMSISKLKT  FNAGVKGSTL300
GVSGPQYVMV  PKKHAEQLRE  SLASGEIDAV  QSQLIADNTP  LNSRSYKVRS  GDTLSGIASR360
LGVSTKDLQQ  WNNLRGSRLK  IGQSLTVGAG  SSAQRLANNS  DSITYRVRKG  DSLSSIARRH420
GVNIKDVMRW  NHDTDNLQPG  DQLTLFVKDN  STPDS455

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help