CAZyme3D

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Entry ID

Information for CAZyme ID: QEO27514.1

Basic Information

GenBank IDQEO27514.1
FamilyPL4_1
Sequence Length534
UniProt IDA0A5C1ZF67(100,100)Download
Average pLDDT?92.97
CAZy50 ID47309
CAZy50 RepNo, UZB11553.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID487909
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusXanthomonas
SpeciesXanthomonas translucens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRLLSLLLC  CCVFCSALPA  AAQSGNFGVT  RSGKRIVVDS  GAHLVFSVDA  GNGDIVSMRY60
AGSELQSPDG  KGSQIASGLG  TAAVAARTIG  DTIVVSAKAG  DLTQYYMARK  GRDALYMATY120
APTLLPIGEL  RFVTRLDVGK  LPNAERESDC  NVGEAIESHD  VFLLPDGRTS  SKFYSARRAI180
DDAMHGVSGP  GVAVYMLMGD  RERSSGGPFF  KDIATQKTAA  THELYNYMFS  NHTQTEPYRG240
GLHGVYALLF  TDGGAPSAAA  TDLGFVDATL  GLQDFLDESG  RGAVSGRVSG  VAAGQPARVG300
LSNGDAQYWA  EAAANGTFRI  DGVRPGRYRI  TLYQNELEVA  QNTLEVYAGA  TAQAALQAAP360
QPDQVQWQIG  VPDGTPSGFR  NAALLASAHP  SDTRMAPWGP  LVYRVGSSAI  GDFPAVQWRG420
VNTPTRIEFV  LAANDVRDYR  LRLYIPLAQA  DGRPQVRVNG  RWNGPLPSVP  VQPDTRGITR480
GTYRGNNTVY  DIDIPATALQ  AGLNALQIDI  ASGSPDNGFL  GPGLVFDSVQ  LLAM534

Predicted 3D structure by AlphaFold2 with pLDDT = 92.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL4_1(25-522)

MQRLLSLLLC  CCVFCSALPA  AAQSGNFGVT  RSGKRIVVDS  GAHLVFSVDA  GNGDIVSMRY60
AGSELQSPDG  KGSQIASGLG  TAAVAARTIG  DTIVVSAKAG  DLTQYYMARK  GRDALYMATY120
APTLLPIGEL  RFVTRLDVGK  LPNAERESDC  NVGEAIESHD  VFLLPDGRTS  SKFYSARRAI180
DDAMHGVSGP  GVAVYMLMGD  RERSSGGPFF  KDIATQKTAA  THELYNYMFS  NHTQTEPYRG240
GLHGVYALLF  TDGGAPSAAA  TDLGFVDATL  GLQDFLDESG  RGAVSGRVSG  VAAGQPARVG300
LSNGDAQYWA  EAAANGTFRI  DGVRPGRYRI  TLYQNELEVA  QNTLEVYAGA  TAQAALQAAP360
QPDQVQWQIG  VPDGTPSGFR  NAALLASAHP  SDTRMAPWGP  LVYRVGSSAI  GDFPAVQWRG420
VNTPTRIEFV  LAANDVRDYR  LRLYIPLAQA  DGRPQVRVNG  RWNGPLPSVP  VQPDTRGITR480
GTYRGNNTVY  DIDIPATALQ  AGLNALQIDI  ASGSPDNGFL  GPGLVFDSVQ  LLAM534

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help