CAZyme3D

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Entry ID

Information for CAZyme ID: QEH40707.1

Basic Information

GenBank IDQEH40707.1
FamilyGH2
Sequence Length811
UniProt IDA0A5B9WJ78(100,100)Download
Average pLDDT?91.35
CAZy50 ID19482
CAZy50 RepNo, QHS60763.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2604421
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga sp. XS-30

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRNLLSSLLL  AMLAMPAFAQ  EVSTELSAWE  FRRTDENIWR  SATVPGTVHT  DLLFHKLIPD60
PFRDANEKGV  QWVDKKDWEY  RTRIDVTPAL  LQHDAVALAF  EGLDTYADVY  VNDVLVLKAQ120
NMFVRKEIPV  KKHLKAGQNS  LRILFHSPIA  QDMPKFLADR  LIYPAGNDAS  DIPLSVHARK180
APYHYGWDWG  PRLVTSGIWR  PVYLRAWNKV  KITDSWIRQQ  QLTDAQAQLE  AAITLDVHKP240
GTYRLIVKSP  HDEFGAEQLS  KTLSAGKQQL  RLPFSIPQPQ  RWWPNGQGDQ  KLYPVEVIVL300
SGNDTLQKKR  QRIGLRTIEV  VNEKDAMGTS  FYVKVNGRPV  FMKGANYIPQ  DNFLPRVSPQ360
QYERLFDDMQ  EAHFNMVRVW  GGGIYENDRF  YELADEKGIL  VWQDFMFACT  LYPSSPDFLQ420
QVKAEAEDNI  TRLRNHPSLA  LWCGNNEIAV  AIKNWGWKDG  YAYTDKQWAQ  LLKGYETLFS480
QLLPDAVKAH  DPGRFYFPSS  PISNWGREED  FRHGDNHYWG  VWHGMEWFEA  FATHVPRFMS540
EYGFQSFPDI  QTVRRYADSS  QWDIHSYVMQ  AHQKSFTRGN  AAIKTYMDHY  YKAPKDFPAF600
LYLSQVLQAE  GMKIGMEAHR  RAMPFCMGTL  YWQLNDCWPG  ASWSGIDYFG  RWKAMHYFVK660
KAYNPVLISH  SKESGRVLTH  VVSDLPEEET  AMLHLQLMDM  YGKEIWNEQV  LVRTKAGGSE720
MVHSIPVTDI  LKGADSTGVI  LYSKLVKNNK  LLSSNVFYYF  AAPPVAAVAQ  SRHCRRCTGD780
KREDEGTPPL  GRTGQERVPL  AGNGRSVPLL  R811

Predicted 3D structure by AlphaFold2 with pLDDT = 91.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(28-731)

MRNLLSSLLL  AMLAMPAFAQ  EVSTELSAWE  FRRTDENIWR  SATVPGTVHT  DLLFHKLIPD60
PFRDANEKGV  QWVDKKDWEY  RTRIDVTPAL  LQHDAVALAF  EGLDTYADVY  VNDVLVLKAQ120
NMFVRKEIPV  KKHLKAGQNS  LRILFHSPIA  QDMPKFLADR  LIYPAGNDAS  DIPLSVHARK180
APYHYGWDWG  PRLVTSGIWR  PVYLRAWNKV  KITDSWIRQQ  QLTDAQAQLE  AAITLDVHKP240
GTYRLIVKSP  HDEFGAEQLS  KTLSAGKQQL  RLPFSIPQPQ  RWWPNGQGDQ  KLYPVEVIVL300
SGNDTLQKKR  QRIGLRTIEV  VNEKDAMGTS  FYVKVNGRPV  FMKGANYIPQ  DNFLPRVSPQ360
QYERLFDDMQ  EAHFNMVRVW  GGGIYENDRF  YELADEKGIL  VWQDFMFACT  LYPSSPDFLQ420
QVKAEAEDNI  TRLRNHPSLA  LWCGNNEIAV  AIKNWGWKDG  YAYTDKQWAQ  LLKGYETLFS480
QLLPDAVKAH  DPGRFYFPSS  PISNWGREED  FRHGDNHYWG  VWHGMEWFEA  FATHVPRFMS540
EYGFQSFPDI  QTVRRYADSS  QWDIHSYVMQ  AHQKSFTRGN  AAIKTYMDHY  YKAPKDFPAF600
LYLSQVLQAE  GMKIGMEAHR  RAMPFCMGTL  YWQLNDCWPG  ASWSGIDYFG  RWKAMHYFVK660
KAYNPVLISH  SKESGRVLTH  VVSDLPEEET  AMLHLQLMDM  YGKEIWNEQV  LVRTKAGGSE720
MVHSIPVTDI  LKGADSTGVI  LYSKLVKNNK  LLSSNVFYYF  AAPPVAAVAQ  SRHCRRCTGD780
KREDEGTPPL  GRTGQERVPL  AGNGRSVPLL  R811

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help