CAZyme3D

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Entry ID

Information for CAZyme ID: QEC68409.1

Basic Information

GenBank IDQEC68409.1
FamilyCE4
Sequence Length213
UniProt IDA0A5B8VAY5(100,100)Download
Average pLDDT?95.04
CAZy50 ID176832
CAZy50 RepNo, QEC40859.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1813871
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusPanacibacter
SpeciesPanacibacter ginsenosidivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFYTVKVPWL  IKKLYPSLTW  EKPTKEKVLY  LTFDDGPHPT  ATPFVLDQLA  KYNAKATFFC60
IGKNVVDQTD  IYKRILDEGH  KTGNHTYNHL  NGWKTSNEKY  FENIFEAANY  IDSDLFRPPY120
GRISKFQIKL  LQESKENKYY  SRPFKIIMWS  VLSGDFDLEL  SPEKCLQYVL  LNAKPGSIIV180
FHDSTKAWDR  MRFALPKVLE  HFSKQGYQFH  SLQ213

Predicted 3D structure by AlphaFold2 with pLDDT = 95.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(22-134)

MFYTVKVPWL  IKKLYPSLTW  EKPTKEKVLY  LTFDDGPHPT  ATPFVLDQLA  KYNAKATFFC60
IGKNVVDQTD  IYKRILDEGH  KTGNHTYNHL  NGWKTSNEKY  FENIFEAANY  IDSDLFRPPY120
GRISKFQIKL  LQESKENKYY  SRPFKIIMWS  VLSGDFDLEL  SPEKCLQYVL  LNAKPGSIIV180
FHDSTKAWDR  MRFALPKVLE  HFSKQGYQFH  SLQ213

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help