CAZyme3D

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Entry ID

Information for CAZyme ID: QEC68092.1

Basic Information

GenBank IDQEC68092.1
FamilyGH125
Sequence Length476
UniProt IDA0A5B8V9T5(100,100)Download
Average pLDDT?94.93
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1813871
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusPanacibacter
SpeciesPanacibacter ginsenosidivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNTRRDFLQS  AGIVGAGLLL  SNNLFAKNKF  EFTSNRPPLA  QRKFTSEAVE  AAIQRIKKDI60
PNQELGWLFE  NCFPNTLDTT  VDFEMIDGKP  DTYVITGDID  AMWLRDSSAQ  VYPYLPLMKE120
DEKLQQLIAG  VINRQTKCIL  KDPYANAFYK  DENKISEWKQ  TDITDMKPGI  HERKWEIDSL180
CYPIRLAYNY  WKITGDDVPF  DIDWIKAIEL  TVTTFKEQQR  KTSEGPYIFQ  RNTSWATDGV240
PLSGYGYPVK  PVGLICSMFR  PSDDATIFPY  LIPSNFFAVA  SLKQAAEMIS  KISGDNKFAN300
ECTQLATEVN  NALKQYAIVQ  HVQMGRVYAY  EVNGFGSFNL  MDDANVPSLL  SLPYLNAVSS360
TDPLYQSTRK  LLLSSYNPFF  FKGTAAEGIG  GPHAGMNMIW  PLSITMRALT  SVNDAEIKQC420
VQWLTKTHAG  TGFMHESFHK  DDPKKFTRKW  FAWSNTLFGE  LIMHLHENKN  ALLKSI476

Predicted 3D structure by AlphaFold2 with pLDDT = 94.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(63-463)

MNTRRDFLQS  AGIVGAGLLL  SNNLFAKNKF  EFTSNRPPLA  QRKFTSEAVE  AAIQRIKKDI60
PNQELGWLFE  NCFPNTLDTT  VDFEMIDGKP  DTYVITGDID  AMWLRDSSAQ  VYPYLPLMKE120
DEKLQQLIAG  VINRQTKCIL  KDPYANAFYK  DENKISEWKQ  TDITDMKPGI  HERKWEIDSL180
CYPIRLAYNY  WKITGDDVPF  DIDWIKAIEL  TVTTFKEQQR  KTSEGPYIFQ  RNTSWATDGV240
PLSGYGYPVK  PVGLICSMFR  PSDDATIFPY  LIPSNFFAVA  SLKQAAEMIS  KISGDNKFAN300
ECTQLATEVN  NALKQYAIVQ  HVQMGRVYAY  EVNGFGSFNL  MDDANVPSLL  SLPYLNAVSS360
TDPLYQSTRK  LLLSSYNPFF  FKGTAAEGIG  GPHAGMNMIW  PLSITMRALT  SVNDAEIKQC420
VQWLTKTHAG  TGFMHESFHK  DDPKKFTRKW  FAWSNTLFGE  LIMHLHENKN  ALLKSI476

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help