CAZyme3D

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Entry ID

Information for CAZyme ID: QEC65696.1

Basic Information

GenBank IDQEC65696.1
FamilyGH43_24
Sequence Length378
UniProt IDA0A5B8V520(100,100)Download
Average pLDDT?92.86
CAZy50 ID13873
CAZy50 RepNo, QRX64606.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID398053
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter ginsenosidivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAIVTRKIHY  ASLLCFLLAV  IVQTEAQSKL  NIPNTSFSPG  AIWPDNNGLH  INAHGGGIWY60
QNGIYYWFGE  HKIEGKKGNS  AQVGVHCYSS  KDLYNWADEG  VVLKVSDDPK  SDITKGSIIE120
RPKVVYNKET  KKYVMWFHLE  LKGKGYAAAL  AGVAVSDKIT  GPYQYLKSLR  ANAGKMPFYP180
HGTPETEKVN  CADTFNKANK  FFYRDFAGGQ  MVRDMTIFMD  DNGKAYHVFS  SEENYTLQIA240
ELDAGYTGYT  GKFARVYIGH  QTEAPALFKR  NGIYYMIGSG  CTGWAPNEAR  WFTAASIWGP300
WTFHGNPCKG  PDAQLTFNGQ  STFVLPVEGK  KDAFIFMADK  WEPQNAIDGR  YLWLPILFKD360
DDIQINWLDK  WNLQIFDQ378

Predicted 3D structure by AlphaFold2 with pLDDT = 92.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_24(60-343)

MAIVTRKIHY  ASLLCFLLAV  IVQTEAQSKL  NIPNTSFSPG  AIWPDNNGLH  INAHGGGIWY60
QNGIYYWFGE  HKIEGKKGNS  AQVGVHCYSS  KDLYNWADEG  VVLKVSDDPK  SDITKGSIIE120
RPKVVYNKET  KKYVMWFHLE  LKGKGYAAAL  AGVAVSDKIT  GPYQYLKSLR  ANAGKMPFYP180
HGTPETEKVN  CADTFNKANK  FFYRDFAGGQ  MVRDMTIFMD  DNGKAYHVFS  SEENYTLQIA240
ELDAGYTGYT  GKFARVYIGH  QTEAPALFKR  NGIYYMIGSG  CTGWAPNEAR  WFTAASIWGP300
WTFHGNPCKG  PDAQLTFNGQ  STFVLPVEGK  KDAFIFMADK  WEPQNAIDGR  YLWLPILFKD360
DDIQINWLDK  WNLQIFDQ378

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help