CAZyme3D

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Entry ID

Information for CAZyme ID: QDZ16788.1

Basic Information

GenBank IDQDZ16788.1
FamilyGH3
Sequence Length512
UniProt IDA0A5B8M7U7(100,100)Download
Average pLDDT?91.30
CAZy50 ID58674
CAZy50 RepNo, UFS58989.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2599293
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusHumibacter
SpeciesHumibacter ginsenosidimutans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNDPDARNRA  ISATLLPGFV  GTSVPDALRT  RFENGLGGVC  IFGYNIESAQ  QLEQLNDDIL60
SVAPLAVIAI  DEEGGDVTRL  NYADGSPYPG  NAVLGRLDET  ELTEKVGNSV  GFALRRTSCT120
LDFAPDIDVN  SNPDNPVIGV  RSFGSDTALV  ARHGAAATRG  IQSAGIAACA  KHFPGHGDTA180
LDSHLALPVI  DRSLDELRER  ELVPFRAAIE  AGVLSIMTSH  IVLPKVDPDA  PATFSPRILQ240
GLLRDELGFD  GVIVTDALDM  KGASGETGIP  EAAVRALRAG  CDLLCIGSET  TDELVGEVIA300
AIDAAITAGR  LSAERVADAA  GRVRALARRL  ERLRSDIRAL  PATQTGAPVG  IERSQEAFDV360
RDGALDALRG  DRPFAVVRIE  TQANIAVGVA  PWGPFAQTAA  DPDAADSRAW  AEHPEHIVAE420
VDAGQDAVLG  GILAEVPEGF  PVVVIGKAVH  RYPFARRVVD  TLRANRPTVV  VDMGWPSDDR480
AYADVATFGA  SRLLGRALMD  LLDRTAASGD  ER512

Predicted 3D structure by AlphaFold2 with pLDDT = 91.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(66-285)

MNDPDARNRA  ISATLLPGFV  GTSVPDALRT  RFENGLGGVC  IFGYNIESAQ  QLEQLNDDIL60
SVAPLAVIAI  DEEGGDVTRL  NYADGSPYPG  NAVLGRLDET  ELTEKVGNSV  GFALRRTSCT120
LDFAPDIDVN  SNPDNPVIGV  RSFGSDTALV  ARHGAAATRG  IQSAGIAACA  KHFPGHGDTA180
LDSHLALPVI  DRSLDELRER  ELVPFRAAIE  AGVLSIMTSH  IVLPKVDPDA  PATFSPRILQ240
GLLRDELGFD  GVIVTDALDM  KGASGETGIP  EAAVRALRAG  CDLLCIGSET  TDELVGEVIA300
AIDAAITAGR  LSAERVADAA  GRVRALARRL  ERLRSDIRAL  PATQTGAPVG  IERSQEAFDV360
RDGALDALRG  DRPFAVVRIE  TQANIAVGVA  PWGPFAQTAA  DPDAADSRAW  AEHPEHIVAE420
VDAGQDAVLG  GILAEVPEGF  PVVVIGKAVH  RYPFARRVVD  TLRANRPTVV  VDMGWPSDDR480
AYADVATFGA  SRLLGRALMD  LLDRTAASGD  ER512

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help