CAZyme3D

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Entry ID

Information for CAZyme ID: QDZ15000.1

Basic Information

GenBank IDQDZ15000.1
FamilyGT2
Sequence Length262
UniProt IDA0A5B8M670(100,100)Download
Average pLDDT?81.59
CAZy50 ID148036
CAZy50 RepNo, QCR41354.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2599293
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusHumibacter
SpeciesHumibacter ginsenosidimutans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHLPALTVVM  PAYNEAQGLP  EFVREVAEAV  RPHTDRLRIV  VVDDRSTDGT  GDVLDALALE60
LPELIVVRSP  KNQGHGPTAL  AAYRAGLETH  PDAVLHVDGD  GQFVGDDFPR  VIDALEHVQV120
VHGVRTGRDE  PWFRRLLTGS  VGLGVAVLAR  GRVPDVNTPL  RLYRAGTLRR  LLDACPSDAL180
VPHVHFSIAE  QRHHVTRAFV  PVRSIPRRGD  SSTGTMWGAA  PAKPKLPPKR  LLQFSARAAR240
EVWRYDVLAR  PVPPARPADL  TA262

Predicted 3D structure by AlphaFold2 with pLDDT = 81.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(7-137)

MHLPALTVVM  PAYNEAQGLP  EFVREVAEAV  RPHTDRLRIV  VVDDRSTDGT  GDVLDALALE60
LPELIVVRSP  KNQGHGPTAL  AAYRAGLETH  PDAVLHVDGD  GQFVGDDFPR  VIDALEHVQV120
VHGVRTGRDE  PWFRRLLTGS  VGLGVAVLAR  GRVPDVNTPL  RLYRAGTLRR  LLDACPSDAL180
VPHVHFSIAE  QRHHVTRAFV  PVRSIPRRGD  SSTGTMWGAA  PAKPKLPPKR  LLQFSARAAR240
EVWRYDVLAR  PVPPARPADL  TA262

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help