CAZyme3D

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Entry ID

Information for CAZyme ID: QDZ06988.1

Basic Information

GenBank IDQDZ06988.1
FamilyGH102
Sequence Length413
UniProt IDA0A5B8LFG6(100,100)Download
Average pLDDT?87.74
CAZy50 ID75030
CAZy50 RepNo, QCB53410.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1813879
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacisoli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLSKLVAVI  ALTVLLAACS  GRIVPPSSST  GSIPAPVRKP  VASTPLPPIT  NNNAVAAGAN60
AAGAGLIAGP  AVSSLTIDRA  RASKALTAFR  LSCRELMRRT  DVSGLTRGVD  WQPACSAAQT120
ANDAQTFFAT  NFETIQVGDG  KAFATGYYIP  EILGSRLRRS  GYEVPIYGRP  TDLIDVDLGK180
FSDTLKGKSI  RGRVEGKNFV  PYYDRTQIES  GAMTNAPIIG  YAADPVALFF  LQVQGSGDVR240
QPDGSTFRIG  YDSQNGRDYT  GIGKLMKDRG  LIQRGSMQDI  VAWLRANPDQ  GRDIMRENKS300
YVFFRLLDGP  PLGALGLPVT  GGVTVAADAK  FIPLGAPVFL  SMDRVDANGL  WIAQDTGGAI360
KGSNRVDTFW  GSGREAEAIA  GGMSARGSAL  LLVPVGTLAR  LQGGASGGTT  PQR413

Predicted 3D structure by AlphaFold2 with pLDDT = 87.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(154-305)

MNLSKLVAVI  ALTVLLAACS  GRIVPPSSST  GSIPAPVRKP  VASTPLPPIT  NNNAVAAGAN60
AAGAGLIAGP  AVSSLTIDRA  RASKALTAFR  LSCRELMRRT  DVSGLTRGVD  WQPACSAAQT120
ANDAQTFFAT  NFETIQVGDG  KAFATGYYIP  EILGSRLRRS  GYEVPIYGRP  TDLIDVDLGK180
FSDTLKGKSI  RGRVEGKNFV  PYYDRTQIES  GAMTNAPIIG  YAADPVALFF  LQVQGSGDVR240
QPDGSTFRIG  YDSQNGRDYT  GIGKLMKDRG  LIQRGSMQDI  VAWLRANPDQ  GRDIMRENKS300
YVFFRLLDGP  PLGALGLPVT  GGVTVAADAK  FIPLGAPVFL  SMDRVDANGL  WIAQDTGGAI360
KGSNRVDTFW  GSGREAEAIA  GGMSARGSAL  LLVPVGTLAR  LQGGASGGTT  PQR413

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help