CAZyme3D

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Entry ID

Information for CAZyme ID: QDY95445.1

Basic Information

GenBank IDQDY95445.1
FamilyCE4
Sequence Length307
UniProt IDA0A543X325(100,100)Download
Average pLDDT?97.38
CAZy50 ID35812
CAZy50 RepNo, QXC61059.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID358
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MISENYSRNL  VGYGRNVPDP  KWPGGARIAV  QFVINYEEGG  ESCILDNDKA  SESLLSEIVG60
AQPWPGQRNL  NMESIYEYGS  RAGFWRLWRM  FTGLGVTTTV  YGVTAAMARN  PEAVAAMKEA120
GWEIASHGYR  WLEYKDFSEE  EERKHIVEAV  RLHTEVTGER  PYGMYQGKPS  DNTLRLVMEE180
GGFLYSSDSY  ADDLPYWVKG  VKDEPFLIIP  YTLETNDMRF  ATPQGFNSGD  QFFTYLKDAF240
DVLYQEGVEG  APKMMSVGLH  CRLVGRPGRA  AALRRFIEYV  LGHEKVWIPQ  RIEIARHWHE300
HHKPEAL307

Predicted 3D structure by AlphaFold2 with pLDDT = 97.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(84-187)

MISENYSRNL  VGYGRNVPDP  KWPGGARIAV  QFVINYEEGG  ESCILDNDKA  SESLLSEIVG60
AQPWPGQRNL  NMESIYEYGS  RAGFWRLWRM  FTGLGVTTTV  YGVTAAMARN  PEAVAAMKEA120
GWEIASHGYR  WLEYKDFSEE  EERKHIVEAV  RLHTEVTGER  PYGMYQGKPS  DNTLRLVMEE180
GGFLYSSDSY  ADDLPYWVKG  VKDEPFLIIP  YTLETNDMRF  ATPQGFNSGD  QFFTYLKDAF240
DVLYQEGVEG  APKMMSVGLH  CRLVGRPGRA  AALRRFIEYV  LGHEKVWIPQ  RIEIARHWHE300
HHKPEAL307

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help