CAZyme3D

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Entry ID

Information for CAZyme ID: QDU49589.1

Basic Information

GenBank IDQDU49589.1
FamilyGH0
Sequence Length651
UniProt IDA0A518A4D9(100,100)Download
Average pLDDT?90.63
CAZy50 ID7829
CAZy50 RepNo, QDT41153.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527978
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia panareensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKVYTVVATC  LLLCFQVSPL  QAAPGKKAGK  LTLVRNGRPT  SVIVTNGRPR  DGQRIAAEEL60
QEHIRVMSGA  TLPIVKENEL  RPNAAEVLIL  VGESNLSRKY  GVITKNLEPE  TFIVKTDRNV120
LILAGEDGGS  KSNARTGTLW  ATYDFLQDQL  GCRWIWPGEQ  GRRVPRRKTI  EVPALDIRET180
PVVKIRHLRL  LAQDKHRGGY  QKEGLGQLLD  LGKTYDQISE  DESVWYRRMR  LGSSFRISAG240
HAFTDWWEKF  KDSDREIFAL  QPDGTRHPRK  KSKPDFVKMC  VSNPRLWELQ  LAKIKKYAAK300
GARGQWLNAC  ENDGSGGFCT  CPRCRAWDAA  PNASLASLPP  VEDGSDVDGA  PDATDLPESL360
SDRYARWYNE  LAVRARKYDP  EVRVVAYAYS  KYRSPPVSLK  HIEPNVWIGY  VGFNAYPRPE420
SYRKMSTDEW  FGWSRLGATV  FLRSNSLFYC  GEGAPYVASH  QMAEDLQFQV  KNGLRATDYD480
ALQGYWATTG  PTYYVLARML  WDTDADVDEV  LDEFYESFGP  MQQVAKDYFD  YWEAFTVGLG540
NNEKFMATRR  ADRMRAYPVI  YNPAVFRQAE  VILARARPLL  RKATEEERER  FHNLELGLQH600
GRLLAAALAD  GKTSTGPAGK  RLMEFRREIA  DRNVINVYWT  TSKEKRYRVF  E651

Predicted 3D structure by AlphaFold2 with pLDDT = 90.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(248-523)

MKVYTVVATC  LLLCFQVSPL  QAAPGKKAGK  LTLVRNGRPT  SVIVTNGRPR  DGQRIAAEEL60
QEHIRVMSGA  TLPIVKENEL  RPNAAEVLIL  VGESNLSRKY  GVITKNLEPE  TFIVKTDRNV120
LILAGEDGGS  KSNARTGTLW  ATYDFLQDQL  GCRWIWPGEQ  GRRVPRRKTI  EVPALDIRET180
PVVKIRHLRL  LAQDKHRGGY  QKEGLGQLLD  LGKTYDQISE  DESVWYRRMR  LGSSFRISAG240
HAFTDWWEKF  KDSDREIFAL  QPDGTRHPRK  KSKPDFVKMC  VSNPRLWELQ  LAKIKKYAAK300
GARGQWLNAC  ENDGSGGFCT  CPRCRAWDAA  PNASLASLPP  VEDGSDVDGA  PDATDLPESL360
SDRYARWYNE  LAVRARKYDP  EVRVVAYAYS  KYRSPPVSLK  HIEPNVWIGY  VGFNAYPRPE420
SYRKMSTDEW  FGWSRLGATV  FLRSNSLFYC  GEGAPYVASH  QMAEDLQFQV  KNGLRATDYD480
ALQGYWATTG  PTYYVLARML  WDTDADVDEV  LDEFYESFGP  MQQVAKDYFD  YWEAFTVGLG540
NNEKFMATRR  ADRMRAYPVI  YNPAVFRQAE  VILARARPLL  RKATEEERER  FHNLELGLQH600
GRLLAAALAD  GKTSTGPAGK  RLMEFRREIA  DRNVINVYWT  TSKEKRYRVF  E651

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help