CAZyme3D

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Entry ID

Information for CAZyme ID: QDU49448.1

Basic Information

GenBank IDQDU49448.1
FamilyGH165
Sequence Length488
UniProt IDA0A518A3Z2(100,100)Download
Average pLDDT?93.07
CAZy50 ID70083
CAZy50 RepNo, QDU56885.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527978
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia panareensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVRASLLCL  SFLILLSGIL  SAEESTHIGS  RRELFVDDWM  IHSLKNARQE  LHHPVPQEVA60
ITYDAPAEGN  ISYYVRILKD  GDLYRMYYRG  AHHDWSKGKV  THQVVCYAES  DDAIHWRKPD120
LGLFEFNGSK  KNNVIWTGTG  AHNFSPFLDT  NPKCKPDEKF  KALGSGKGGL  YAFASADGIH180
WRLIKDKPVI  TKGAFDSQNL  AFWDAHRSRY  VDFHRGFTNG  VRAIMTCTSD  DFVNWTTPEF240
IDIKNSPPQH  LYTNATIAYP  RAPHLFLAFP  KRFVPSRKAA  WHPDPKNNHP  GVSDGVLMTS300
RDGRHWTRWD  EAFLRPGQNR  ERWWQRNNHI  AWGITTTPSP  LPGHVPELSL  YAIENYYVGP360
CRLRRFTLRQ  DGFVSINAPF  TGGEMTTRLI  TFDGPKAKAG  TEKTPVELEL  NLSTSAAGSV420
KCELLDAEDQ  PLPGFSLKES  EEFYGDELDH  VMTWKGKRDL  SELAGKPIRV  RFVLKDADLY480
SLRFRNGE488

Predicted 3D structure by AlphaFold2 with pLDDT = 93.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH165(23-485)

MRVRASLLCL  SFLILLSGIL  SAEESTHIGS  RRELFVDDWM  IHSLKNARQE  LHHPVPQEVA60
ITYDAPAEGN  ISYYVRILKD  GDLYRMYYRG  AHHDWSKGKV  THQVVCYAES  DDAIHWRKPD120
LGLFEFNGSK  KNNVIWTGTG  AHNFSPFLDT  NPKCKPDEKF  KALGSGKGGL  YAFASADGIH180
WRLIKDKPVI  TKGAFDSQNL  AFWDAHRSRY  VDFHRGFTNG  VRAIMTCTSD  DFVNWTTPEF240
IDIKNSPPQH  LYTNATIAYP  RAPHLFLAFP  KRFVPSRKAA  WHPDPKNNHP  GVSDGVLMTS300
RDGRHWTRWD  EAFLRPGQNR  ERWWQRNNHI  AWGITTTPSP  LPGHVPELSL  YAIENYYVGP360
CRLRRFTLRQ  DGFVSINAPF  TGGEMTTRLI  TFDGPKAKAG  TEKTPVELEL  NLSTSAAGSV420
KCELLDAEDQ  PLPGFSLKES  EEFYGDELDH  VMTWKGKRDL  SELAGKPIRV  RFVLKDADLY480
SLRFRNGE488

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help