CAZyme3D

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Entry ID

Information for CAZyme ID: QDU42674.1

Basic Information

GenBank IDQDU42674.1
FamilyGH165
Sequence Length458
UniProt IDA0A517ZJM5(100,100)Download
Average pLDDT?91.71
CAZy50 ID76993
CAZy50 RepNo, QDU95593.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527995
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusSymmachiella
SpeciesSymmachiella dynata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQIAKVLAFT  VTLLATFGTS  TVGQGAEPID  IGSRLELFVD  NHLIEAVTGD  VQQVVQNPQP60
REVVLVHDEP  WGGNICAYFT  VLQDNDTYRM  VYRSAQHDKA  NPKKGWGIAV  YVESKDGIHW120
TKPNLGMFSF  RGNKENNILD  LGSGGNVHHN  FTIFRDDNPA  TPDEERYKGV  GGLAHGLIGF180
TSPDCIHWKR  VQEEPIIKNG  RFDSQNIVFW  DSDRKEYRAY  WRVYPNKIRA  IRTATSQDFI240
HWEEGQELTY  TDDSPPVELY  TNAIQKYFRA  PHLFLGFPTR  FYEESEQVEP  LFMASRDGVK300
FRRYTSPVIP  RTAPKDRNLN  RSNYMVWGMV  QLPGKPDEIS  VYGTENYYQK  TPGRVRRFVY360
RVDGFVALHG  GEDGGQVVTK  PLRYTGEELL  LNSVVPQDGS  LKIEVLDEHG  KVLGLSQPIV420
GDAIDRVVTW  DRDPDLSAGI  VQLRFTIKDA  DVYSFRFK458

Predicted 3D structure by AlphaFold2 with pLDDT = 91.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH165(26-457)

MQIAKVLAFT  VTLLATFGTS  TVGQGAEPID  IGSRLELFVD  NHLIEAVTGD  VQQVVQNPQP60
REVVLVHDEP  WGGNICAYFT  VLQDNDTYRM  VYRSAQHDKA  NPKKGWGIAV  YVESKDGIHW120
TKPNLGMFSF  RGNKENNILD  LGSGGNVHHN  FTIFRDDNPA  TPDEERYKGV  GGLAHGLIGF180
TSPDCIHWKR  VQEEPIIKNG  RFDSQNIVFW  DSDRKEYRAY  WRVYPNKIRA  IRTATSQDFI240
HWEEGQELTY  TDDSPPVELY  TNAIQKYFRA  PHLFLGFPTR  FYEESEQVEP  LFMASRDGVK300
FRRYTSPVIP  RTAPKDRNLN  RSNYMVWGMV  QLPGKPDEIS  VYGTENYYQK  TPGRVRRFVY360
RVDGFVALHG  GEDGGQVVTK  PLRYTGEELL  LNSVVPQDGS  LKIEVLDEHG  KVLGLSQPIV420
GDAIDRVVTW  DRDPDLSAGI  VQLRFTIKDA  DVYSFRFK458

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help