CAZyme3D

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Entry ID

Information for CAZyme ID: QDU01594.1

Basic Information

GenBank IDQDU01594.1
FamilyGH165
Sequence Length490
UniProt IDA0A517W8M4(100,100)Download
Average pLDDT?94.14
CAZy50 ID22001
CAZy50 RepNo, QXD25504.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2605989
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia chilikensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRALLLLMLF  FVGSLNVVGL  QAGEKKPLPI  GDHRELFVDD  YLIGKMKNVS  LRLHQPVDEG60
VVLKFDKPWE  GLFCGYCTII  KDGDLYRAYY  RGRPQAGADG  DTGEVYCYAE  SKDGIHWTKP120
EFSLFEKQGF  KKNNIILADA  APMTHNLSPF  LDTRPGVPES  ERYKALGGTM  KSGLVAFTSP180
DGIHWKQHPA  GTVISKEMVP  FPYMFDSQNV  AFWSPVEKKY  ISYFRVFKDK  LRRIARTESD240
DFIHWSEPVL  MEYTHRGDKS  PIEHLYTNQT  HPYFRAPHIY  LAVAARFMPG  RQVLTDEQAE300
KIGVHPRYFK  DTSDAILMTT  RGGNMYDRTF  LSGFITGGIG  AQNWVSRTNY  PALNVVQTGP360
AEMSVYVNQD  YAQPTAHLRR  YSLRLDGFAS  VRADYAGGEL  VTKPLTFDGS  ELSINFSTSA420
AGGIKVEIQD  ENGKPIPGFT  LADAREQIGN  EINRIVTWKG  GSDVSALSGK  PVRLKFVMKD480
ADLYSLQFVK  490

Predicted 3D structure by AlphaFold2 with pLDDT = 94.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH165(24-487)

MRALLLLMLF  FVGSLNVVGL  QAGEKKPLPI  GDHRELFVDD  YLIGKMKNVS  LRLHQPVDEG60
VVLKFDKPWE  GLFCGYCTII  KDGDLYRAYY  RGRPQAGADG  DTGEVYCYAE  SKDGIHWTKP120
EFSLFEKQGF  KKNNIILADA  APMTHNLSPF  LDTRPGVPES  ERYKALGGTM  KSGLVAFTSP180
DGIHWKQHPA  GTVISKEMVP  FPYMFDSQNV  AFWSPVEKKY  ISYFRVFKDK  LRRIARTESD240
DFIHWSEPVL  MEYTHRGDKS  PIEHLYTNQT  HPYFRAPHIY  LAVAARFMPG  RQVLTDEQAE300
KIGVHPRYFK  DTSDAILMTT  RGGNMYDRTF  LSGFITGGIG  AQNWVSRTNY  PALNVVQTGP360
AEMSVYVNQD  YAQPTAHLRR  YSLRLDGFAS  VRADYAGGEL  VTKPLTFDGS  ELSINFSTSA420
AGGIKVEIQD  ENGKPIPGFT  LADAREQIGN  EINRIVTWKG  GSDVSALSGK  PVRLKFVMKD480
ADLYSLQFVK  490

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help