CAZyme3D

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Entry ID

Information for CAZyme ID: QDT40595.1

Basic Information

GenBank IDQDT40595.1
FamilyCE12
Sequence Length248
UniProt IDA0A517R9P2(100,100)Download
Average pLDDT?90.84
CAZy50 ID171624
CAZy50 RepNo, QDU08469.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527973
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia alba

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKPAPRQILL  TIAVLFFSLT  FAHLKSHAAE  PQIRILMIGD  STMATYHKPP  KDRPDLTGWG60
QVFGEFFTDD  VTVLNRAASG  RSSKSFIKEG  RWKKAVAEKA  DYLFIQFGHN  DCPGKGDRET120
DPKTTYQDYL  RQYIDEARAA  NIKPVLVTPM  TRRQFQNGKI  MTILRPYAEA  MLKVGREKNV180
PVIDLHQKSV  TLFNQLGDAG  SNDFSPSKSD  RTHFSRKGAR  EIARLVAEEI  PTTVPDLKPY240
LKQSATTN248

Predicted 3D structure by AlphaFold2 with pLDDT = 90.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(34-230)

MKPAPRQILL  TIAVLFFSLT  FAHLKSHAAE  PQIRILMIGD  STMATYHKPP  KDRPDLTGWG60
QVFGEFFTDD  VTVLNRAASG  RSSKSFIKEG  RWKKAVAEKA  DYLFIQFGHN  DCPGKGDRET120
DPKTTYQDYL  RQYIDEARAA  NIKPVLVTPM  TRRQFQNGKI  MTILRPYAEA  MLKVGREKNV180
PVIDLHQKSV  TLFNQLGDAG  SNDFSPSKSD  RTHFSRKGAR  EIARLVAEEI  PTTVPDLKPY240
LKQSATTN248

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help