CAZyme3D

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Entry ID

Information for CAZyme ID: QDT27719.1

Basic Information

GenBank IDQDT27719.1
FamilyGH165
Sequence Length378
UniProt IDA0A517Q7V3(100,100)Download
Average pLDDT?89.70
CAZy50 ID70083
CAZy50 RepNo, QDU56885.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527978
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia panareensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVRAPLLCL  SFLLLLSGLL  SAEDPAHIGS  RRELFVDDWM  IHSLKNARQE  LHHPVPQEVA60
ITYDAPAEGN  ISYYVRILKD  GDLYRMYYRG  AHHDWSKGKV  THQVVCYAES  DDAIHWRKPD120
LGLFEFNGSK  KNNVIWTGTG  AHNFSPFLDT  NPQCKPAEKF  KALGSGKGGL  YAFASADGIH180
WRLLKEKPVI  TKGAFDSQNL  AFWDEHRGRY  VDFHRGFTNG  VRAIMTCTSD  DFVNWTTPAF240
IDIKDSPSQH  LYTNATIAYP  RAPHLFLAFP  KRFVPSRKAA  WHPDPKNNHP  GVSDGVLMTS300
RDGMHWNRWD  EAFLRPGQNR  ERWWQRNNHI  AWGITTTPSP  LPGHVPELSL  YAIENYYVGP360
CRLRRFCKQR  SENVARAG378

Predicted 3D structure by AlphaFold2 with pLDDT = 89.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH165(21-326)

MRVRAPLLCL  SFLLLLSGLL  SAEDPAHIGS  RRELFVDDWM  IHSLKNARQE  LHHPVPQEVA60
ITYDAPAEGN  ISYYVRILKD  GDLYRMYYRG  AHHDWSKGKV  THQVVCYAES  DDAIHWRKPD120
LGLFEFNGSK  KNNVIWTGTG  AHNFSPFLDT  NPQCKPAEKF  KALGSGKGGL  YAFASADGIH180
WRLLKEKPVI  TKGAFDSQNL  AFWDEHRGRY  VDFHRGFTNG  VRAIMTCTSD  DFVNWTTPAF240
IDIKDSPSQH  LYTNATIAYP  RAPHLFLAFP  KRFVPSRKAA  WHPDPKNNHP  GVSDGVLMTS300
RDGMHWNRWD  EAFLRPGQNR  ERWWQRNNHI  AWGITTTPSP  LPGHVPELSL  YAIENYYVGP360
CRLRRFCKQR  SENVARAG378

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help