CAZyme3D

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Entry ID

Information for CAZyme ID: QDT14411.1

Basic Information

GenBank IDQDT14411.1
FamilyGH174
Sequence Length1184
UniProt IDA0A517P4X3(100,100)Download
Average pLDDT?89.65
CAZy50 ID8174
CAZy50 RepNo, EMB13744.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527989
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusAlienimonas
SpeciesAlienimonas californiensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHLVVSRLLL  LAFASVAPAA  AAFDDRAPTD  TLPPLTDGRA  PANFEEMWAG  FDPLAEPLEV60
ETLREWEEDG  VAMKVVRFRI  GVFKGEKATL  AAVYGAPADL  AEGKRVPGLV  QIHGGGQFAD120
ENACLTNARR  GYATVSIAWA  GRISAKDYRV  GPDEVRLFWD  GKTDDPAYRV  TTDWGAVDGY180
HAPGRNPRNA  FPSAQPAAWT  LDAVESPRNS  GWFLAAIAAR  RALTYLESRP  EVDADRLGVY240
GHSMGGKLTV  MTAVDDRVKA  AAPSCGGISD  RDNDSPLFRA  TLGDDVSLKH  VDCPIVFLSP300
SNDFHGRIGD  LPRAISEIAS  EEWRATCSPH  RNHQDAPEYE  VATQLWFDQH  LKGTFVTPET360
PRTTLDLTAA  DGTPTLTVEP  DRSRRILAVD  VYYTQDGKPD  ETPADRDDVV  HRYWRHADAV420
EIDGRWTASL  PLASTDAPLW  AYANVLYALD  EPVTGAGYYY  RTYTTDRFNL  SSLLTVASPK480
DLRENGVRPA  LTRPATSGPV  VIETFEPGWE  RAWFTNTPER  WGRTTNKISD  EFYAAPAGGR540
LAVDVQSEQA  NELVIRLDDY  VAVVPVRPTD  GGWRTVSLSP  EEFQNFDGEP  RTDWGGVRQL600
TLSEAERLRG  SRGDARPSRV  VGGSWQGPPR  FRDLRWEPPQ  VAADPAPPTD  GAALLDVFPP660
PTATVAPDRR  GETQLIEAFT  PTDPALWDER  LDERAVFHLE  MRHDQRPENS  FRLRLGRGGQ720
IYSLQGPFGE  SMPPSWRAPG  GKLSPWNDEV  WQFVAVCTRY  NGLAAVEKAG  PVPPAFARAL780
RDSGYEDTFF  IHNSGAYVPG  EATSLYCPLL  ASDYDEATGT  ARMLNWGLVP  QLKTIHRSPL840
LYYTQVRDAG  DGVIELTWVV  HHFGDREDVV  FDHLNAPWGG  TRVSSLPVRR  VSSPTGELLQ900
REGLLSEHGT  IDVRKTGGWN  LSSASEAADS  PSLALVFGRD  KHLEAELARR  DAGEPYVQFK960
HSLYRDWRAS  EPLYRTQWQD  WAERPANSFR  NYDVCEIIPK  LRIVPDSTIW  FRSYLVVGPS1020
AEAQRRAAEL  VPHVDYGLLQ  FPRASTALRS  VSLPSAGDAP  AASFELYSKP  VPGSRPVFLI1080
RNRQTNEEAV  TADPYLFVKS  EPLALDLPAE  HPHADYFAEV  RGLSLAERRS  DWRALLGYAL1140
LEPPEEPGWQ  PLSQALRGGR  FPAAEGRHRE  LWVRLDGDGE  SSPR1184

Predicted 3D structure by AlphaFold2 with pLDDT = 89.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MHLVVSRLLL  LAFASVAPAA  AAFDDRAPTD  TLPPLTDGRA  PANFEEMWAG  FDPLAEPLEV60
ETLREWEEDG  VAMKVVRFRI  GVFKGEKATL  AAVYGAPADL  AEGKRVPGLV  QIHGGGQFAD120
ENACLTNARR  GYATVSIAWA  GRISAKDYRV  GPDEVRLFWD  GKTDDPAYRV  TTDWGAVDGY180
HAPGRNPRNA  FPSAQPAAWT  LDAVESPRNS  GWFLAAIAAR  RALTYLESRP  EVDADRLGVY240
GHSMGGKLTV  MTAVDDRVKA  AAPSCGGISD  RDNDSPLFRA  TLGDDVSLKH  VDCPIVFLSP300
SNDFHGRIGD  LPRAISEIAS  EEWRATCSPH  RNHQDAPEYE  VATQLWFDQH  LKGTFVTPET360
PRTTLDLTAA  DGTPTLTVEP  DRSRRILAVD  VYYTQDGKPD  ETPADRDDVV  HRYWRHADAV420
EIDGRWTASL  PLASTDAPLW  AYANVLYALD  EPVTGAGYYY  RTYTTDRFNL  SSLLTVASPK480
DLRENGVRPA  LTRPATSGPV  VIETFEPGWE  RAWFTNTPER  WGRTTNKISD  EFYAAPAGGR540
LAVDVQSEQA  NELVIRLDDY  VAVVPVRPTD  GGWRTVSLSP  EEFQNFDGEP  RTDWGGVRQL600
TLSEAERLRG  SRGDARPSRV  VGGSWQGPPR  FRDLRWEPPQ  VAADPAPPTD  GAALLDVFPP660
PTATVAPDRR  GETQLIEAFT  PTDPALWDER  LDERAVFHLE  MRHDQRPENS  FRLRLGRGGQ720
IYSLQGPFGE  SMPPSWRAPG  GKLSPWNDEV  WQFVAVCTRY  NGLAAVEKAG  PVPPAFARAL780
RDSGYEDTFF  IHNSGAYVPG  EATSLYCPLL  ASDYDEATGT  ARMLNWGLVP  QLKTIHRSPL840
LYYTQVRDAG  DGVIELTWVV  HHFGDREDVV  FDHLNAPWGG  TRVSSLPVRR  VSSPTGELLQ900
REGLLSEHGT  IDVRKTGGWN  LSSASEAADS  PSLALVFGRD  KHLEAELARR  DAGEPYVQFK960
HSLYRDWRAS  EPLYRTQWQD  WAERPANSFR  NYDVCEIIPK  LRIVPDSTIW  FRSYLVVGPS1020
AEAQRRAAEL  VPHVDYGLLQ  FPRASTALRS  VSLPSAGDAP  AASFELYSKP  VPGSRPVFLI1080
RNRQTNEEAV  TADPYLFVKS  EPLALDLPAE  HPHADYFAEV  RGLSLAERRS  DWRALLGYAL1140
LEPPEEPGWQ  PLSQALRGGR  FPAAEGRHRE  LWVRLDGDGE  SSPR1184

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help