CAZyme3D

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Entry ID

Information for CAZyme ID: QDS91568.1

Basic Information

GenBank IDQDS91568.1
FamilyGH165
Sequence Length460
UniProt IDA0A517M9K0(100,100)Download
Average pLDDT?92.87
CAZy50 ID76993
CAZy50 RepNo, QDU95593.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1930274
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPirellulales
FamilyPirellulaceae
GenusRoseimaritima
SpeciesRoseimaritima multifibrata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNVMFYPFKI  LLTSALLTFL  VTADLFSAEP  VDVGNRLELF  VDSHLIDSID  GDARQQLMKP60
EPKEVVFVTD  QPWEGNTSGY  YTLFQDGDLY  RMIYRGWQHD  EKMKAVHQEV  TCYAESTDGI120
HWVKPKLGLF  EWNGSKENNI  VWLGPGRHNF  TAFRDDNPAT  SKSSRYKAFG  GIGELGGGLV180
PFASPDCVNW  KMIQEKPVIT  HGAFDSQNLA  FWDADRGEYR  AYWRYFGDGV  RSVRTATSQD240
FITWENEADL  TYTEGTPNEH  LYTNAIQKYF  RAPHLFIGFP  TRYEPKSQQV  EPILMTSRDG300
QTFHRYAEPV  IPRTAPKDRN  RNRSNYMTWG  MFQLPNQPKE  ISVYATENYY  EPTPGRVRRF360
VYRVDGFVAL  RGGTDGGAVT  TKPLRFTGER  LLLNYVVRPG  GTLTVEVLGE  SGEVTGKSKP420
LTGDAVDAPI  AWEQAPDWTL  GVAQLRFTMK  NADVYSLRFQ  460

Predicted 3D structure by AlphaFold2 with pLDDT = 92.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH165(27-459)

MNVMFYPFKI  LLTSALLTFL  VTADLFSAEP  VDVGNRLELF  VDSHLIDSID  GDARQQLMKP60
EPKEVVFVTD  QPWEGNTSGY  YTLFQDGDLY  RMIYRGWQHD  EKMKAVHQEV  TCYAESTDGI120
HWVKPKLGLF  EWNGSKENNI  VWLGPGRHNF  TAFRDDNPAT  SKSSRYKAFG  GIGELGGGLV180
PFASPDCVNW  KMIQEKPVIT  HGAFDSQNLA  FWDADRGEYR  AYWRYFGDGV  RSVRTATSQD240
FITWENEADL  TYTEGTPNEH  LYTNAIQKYF  RAPHLFIGFP  TRYEPKSQQV  EPILMTSRDG300
QTFHRYAEPV  IPRTAPKDRN  RNRSNYMTWG  MFQLPNQPKE  ISVYATENYY  EPTPGRVRRF360
VYRVDGFVAL  RGGTDGGAVT  TKPLRFTGER  LLLNYVVRPG  GTLTVEVLGE  SGEVTGKSKP420
LTGDAVDAPI  AWEQAPDWTL  GVAQLRFTMK  NADVYSLRFQ  460

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help