CAZyme3D

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Entry ID

Information for CAZyme ID: QDQ89775.1

Basic Information

GenBank IDQDQ89775.1
FamilyGT89
Sequence Length639
UniProt IDA0A516WGA3(100,100)Download
Average pLDDT?89.94
CAZy50 ID41722
CAZy50 RepNo, AQA25910.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2594007
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. WB9

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVGGAEDSDA  AAERTTERHR  KAILSRVVFL  GGVAISALLM  FWGAWERRWI  ADDGLIVLRT60
VRNLLAGNGP  VFNSGERVEA  NTSTAWTYIV  YAFSWLSQAR  LEYVVLTIAL  ILSTAAIVLA120
MFGTARLYRG  GSFAGGGTLL  LMPAGVLVYI  AVPPARDFAT  SGLESCLVIF  WIALLWLLLV180
RWSQATAPST  TSVLVLSFIA  GMGPLVRPEL  AILGVLSLAM  IFLAPGLTWV  VRVAMVFVAG240
IVPVGYQIWR  MGYYALPYPN  TAVSKDAGGA  KWSQGFAYLW  NLLGPYLLWL  PLVFLFAGAV300
IAWRGRDKSI  ADGVRHTEGN  RLTRLRGWLR  TQNAVVVFIL  ASGLILGLYS  LRVGGDFMHG360
RVLLPVLFCF  IVPVAVIPVR  IPDRAAWGRN  RESSLFLAMA  FLWAGTVVWA  FFASNTTGMP420
EGVVIGRSGI  VDERAFYVLN  TGHAHPIRAD  DYLDYPRMRA  MVQTISDTPD  GGLLIPSADY480
TYWFVVPPPL  PIPDGGAGHT  VYFLNLGMTS  MNVGLDVRVL  DQMGLAYPLA  AHTERLDDGR540
IGHDKNLYPD  WVVVDTGMID  KHPWMPGFLD  EEWVTEARVA  LTCPETQDLL  TSYRSELTWP600
RFKQNFKDAL  HFASYRFERV  PAYEIQRCNL  EPPLPEPAK639

Predicted 3D structure by AlphaFold2 with pLDDT = 89.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(28-631)

MVGGAEDSDA  AAERTTERHR  KAILSRVVFL  GGVAISALLM  FWGAWERRWI  ADDGLIVLRT60
VRNLLAGNGP  VFNSGERVEA  NTSTAWTYIV  YAFSWLSQAR  LEYVVLTIAL  ILSTAAIVLA120
MFGTARLYRG  GSFAGGGTLL  LMPAGVLVYI  AVPPARDFAT  SGLESCLVIF  WIALLWLLLV180
RWSQATAPST  TSVLVLSFIA  GMGPLVRPEL  AILGVLSLAM  IFLAPGLTWV  VRVAMVFVAG240
IVPVGYQIWR  MGYYALPYPN  TAVSKDAGGA  KWSQGFAYLW  NLLGPYLLWL  PLVFLFAGAV300
IAWRGRDKSI  ADGVRHTEGN  RLTRLRGWLR  TQNAVVVFIL  ASGLILGLYS  LRVGGDFMHG360
RVLLPVLFCF  IVPVAVIPVR  IPDRAAWGRN  RESSLFLAMA  FLWAGTVVWA  FFASNTTGMP420
EGVVIGRSGI  VDERAFYVLN  TGHAHPIRAD  DYLDYPRMRA  MVQTISDTPD  GGLLIPSADY480
TYWFVVPPPL  PIPDGGAGHT  VYFLNLGMTS  MNVGLDVRVL  DQMGLAYPLA  AHTERLDDGR540
IGHDKNLYPD  WVVVDTGMID  KHPWMPGFLD  EEWVTEARVA  LTCPETQDLL  TSYRSELTWP600
RFKQNFKDAL  HFASYRFERV  PAYEIQRCNL  EPPLPEPAK639

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help