Information for CAZyme ID: QDQ89775.1
Basic Information
GenBank ID | QDQ89775.1 |
Family | GT89 |
Sequence Length | 639 |
UniProt ID | A0A516WGA3(100,100)![]() |
Average pLDDT? | 89.94 |
CAZy50 ID | 41722 |
CAZy50 Rep | No, AQA25910.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2594007 |
Kingdom | Bacteria |
Phylum | Actinomycetota |
Class | Actinomycetes |
Order | Mycobacteriales |
Family | Nocardiaceae |
Genus | Rhodococcus |
Species | Rhodococcus sp. WB9 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MVGGAEDSDA AAERTTERHR KAILSRVVFL GGVAISALLM FWGAWERRWI ADDGLIVLRT | 60 |
VRNLLAGNGP VFNSGERVEA NTSTAWTYIV YAFSWLSQAR LEYVVLTIAL ILSTAAIVLA | 120 |
MFGTARLYRG GSFAGGGTLL LMPAGVLVYI AVPPARDFAT SGLESCLVIF WIALLWLLLV | 180 |
RWSQATAPST TSVLVLSFIA GMGPLVRPEL AILGVLSLAM IFLAPGLTWV VRVAMVFVAG | 240 |
IVPVGYQIWR MGYYALPYPN TAVSKDAGGA KWSQGFAYLW NLLGPYLLWL PLVFLFAGAV | 300 |
IAWRGRDKSI ADGVRHTEGN RLTRLRGWLR TQNAVVVFIL ASGLILGLYS LRVGGDFMHG | 360 |
RVLLPVLFCF IVPVAVIPVR IPDRAAWGRN RESSLFLAMA FLWAGTVVWA FFASNTTGMP | 420 |
EGVVIGRSGI VDERAFYVLN TGHAHPIRAD DYLDYPRMRA MVQTISDTPD GGLLIPSADY | 480 |
TYWFVVPPPL PIPDGGAGHT VYFLNLGMTS MNVGLDVRVL DQMGLAYPLA AHTERLDDGR | 540 |
IGHDKNLYPD WVVVDTGMID KHPWMPGFLD EEWVTEARVA LTCPETQDLL TSYRSELTWP | 600 |
RFKQNFKDAL HFASYRFERV PAYEIQRCNL EPPLPEPAK | 639 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.94 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT89(28-631)
MVGGAEDSDA AAERTTERHR KAILSRVVFL GGVAISALLM FWGAWERRWI ADDGLIVLRT | 60 |
VRNLLAGNGP VFNSGERVEA NTSTAWTYIV YAFSWLSQAR LEYVVLTIAL ILSTAAIVLA | 120 |
MFGTARLYRG GSFAGGGTLL LMPAGVLVYI AVPPARDFAT SGLESCLVIF WIALLWLLLV | 180 |
RWSQATAPST TSVLVLSFIA GMGPLVRPEL AILGVLSLAM IFLAPGLTWV VRVAMVFVAG | 240 |
IVPVGYQIWR MGYYALPYPN TAVSKDAGGA KWSQGFAYLW NLLGPYLLWL PLVFLFAGAV | 300 |
IAWRGRDKSI ADGVRHTEGN RLTRLRGWLR TQNAVVVFIL ASGLILGLYS LRVGGDFMHG | 360 |
RVLLPVLFCF IVPVAVIPVR IPDRAAWGRN RESSLFLAMA FLWAGTVVWA FFASNTTGMP | 420 |
EGVVIGRSGI VDERAFYVLN TGHAHPIRAD DYLDYPRMRA MVQTISDTPD GGLLIPSADY | 480 |
TYWFVVPPPL PIPDGGAGHT VYFLNLGMTS MNVGLDVRVL DQMGLAYPLA AHTERLDDGR | 540 |
IGHDKNLYPD WVVVDTGMID KHPWMPGFLD EEWVTEARVA LTCPETQDLL TSYRSELTWP | 600 |
RFKQNFKDAL HFASYRFERV PAYEIQRCNL EPPLPEPAK | 639 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.