CAZyme3D

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Entry ID

Information for CAZyme ID: QDP85735.1

Basic Information

GenBank IDQDP85735.1
FamilyCBM20, GH77
Sequence Length885
UniProt IDA0A516P3M0(100,100)Download
Average pLDDT?93.68
CAZy50 ID20302
CAZy50 RepNo, QBO58273.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2594269
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium sp. SNU WT5

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLYLNINYR  TNFGENLQVV  VFEEGTNEKT  YPLRYCENGN  WTAEVDYFSR  NIVYRFQVIN60
DEGFVFDAEF  SLHHLKFPHN  YEEFVIYDFW  NSKNFPENYL  NNKILKNRLR  HFKAEKVSVL120
KKHTHIFRLE  APIDHLNWKV  VILGNCEALG  NWEYLKTVPM  SQTDFGIWEV  ALELPHNQII180
QYKYGLKNLD  SGEVFDLEYG  ANRWTLPNDE  RNTLFIKADH  YFRFKPYQMY  HAAGVAVPVF240
SLRTKNGFGV  GEFLDLKKLA  DWAKKTNLSI  LQILPVNDTT  ANYTWSDSYP  YAAISVYALH300
PQYLSIENLE  HQMTEELMSE  FVAERKNLNS  LHHVDYERVV  SGKWYYVRSI  FKIKKDVILK360
DRHFKQFIKQ  NEDWLIPYAA  FCVLRDQYKT  PNFNEWKTHK  KYISGKINSF  FDPQHKYFDI420
VMLHCWVQYQ  LHVQLKEAIN  YTHSLGISVK  GDLPIGIFRY  SVEAWTAPEL  FEMDFQAGAP480
PDQFSDLGQN  WEFPTYNWEA  MKKDGYSWWK  NRFKALEQYF  DAMRIDHILG  FFRIWRMPMS540
ATQGILGYFY  PAIPVTMDEF  FARDIPFNYE  RYCKPFINDQ  ILAIYFGEQK  DRIIDHFLNA600
HTDGSYSFRQ  LFDSQRKLTD  YFKTNAFGEA  EGQLVSLAAN  VLFLEEHLKN  NETVYHPRFN660
IEKTASYQYL  SDDEKGKLSE  LYVDYFFKRQ  DGLWYQKGME  KLPVILNATD  MLICGEDLGL720
VPECVPKVMN  RLGITGLKVQ  RMPAGNIPWY  NPKKVGYMNV  ITASSHDSST  LRQWWHENRV780
FTQQYFHQQL  GQYGTAPWDL  EPEIAEMIMK  QHLYNDAMLA  IFPIQEFFAT  DKDLVNPDTN840
EERINDPSSF  PHHWRYRMHL  NLEHLINQEE  FNQKIASWIS  DSNRN885

Predicted 3D structure by AlphaFold2 with pLDDT = 93.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(139-206)+GH77(237-877)

MKLYLNINYR  TNFGENLQVV  VFEEGTNEKT  YPLRYCENGN  WTAEVDYFSR  NIVYRFQVIN60
DEGFVFDAEF  SLHHLKFPHN  YEEFVIYDFW  NSKNFPENYL  NNKILKNRLR  HFKAEKVSVL120
KKHTHIFRLE  APIDHLNWKV  VILGNCEALG  NWEYLKTVPM  SQTDFGIWEV  ALELPHNQII180
QYKYGLKNLD  SGEVFDLEYG  ANRWTLPNDE  RNTLFIKADH  YFRFKPYQMY  HAAGVAVPVF240
SLRTKNGFGV  GEFLDLKKLA  DWAKKTNLSI  LQILPVNDTT  ANYTWSDSYP  YAAISVYALH300
PQYLSIENLE  HQMTEELMSE  FVAERKNLNS  LHHVDYERVV  SGKWYYVRSI  FKIKKDVILK360
DRHFKQFIKQ  NEDWLIPYAA  FCVLRDQYKT  PNFNEWKTHK  KYISGKINSF  FDPQHKYFDI420
VMLHCWVQYQ  LHVQLKEAIN  YTHSLGISVK  GDLPIGIFRY  SVEAWTAPEL  FEMDFQAGAP480
PDQFSDLGQN  WEFPTYNWEA  MKKDGYSWWK  NRFKALEQYF  DAMRIDHILG  FFRIWRMPMS540
ATQGILGYFY  PAIPVTMDEF  FARDIPFNYE  RYCKPFINDQ  ILAIYFGEQK  DRIIDHFLNA600
HTDGSYSFRQ  LFDSQRKLTD  YFKTNAFGEA  EGQLVSLAAN  VLFLEEHLKN  NETVYHPRFN660
IEKTASYQYL  SDDEKGKLSE  LYVDYFFKRQ  DGLWYQKGME  KLPVILNATD  MLICGEDLGL720
VPECVPKVMN  RLGITGLKVQ  RMPAGNIPWY  NPKKVGYMNV  ITASSHDSST  LRQWWHENRV780
FTQQYFHQQL  GQYGTAPWDL  EPEIAEMIMK  QHLYNDAMLA  IFPIQEFFAT  DKDLVNPDTN840
EERINDPSSF  PHHWRYRMHL  NLEHLINQEE  FNQKIASWIS  DSNRN885

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help