Information for CAZyme ID: QDP21009.1
Basic Information
| GenBank ID | QDP21009.1 |
| Family | GT4 |
| Sequence Length | 347 |
| UniProt ID | A0A516IVU5(100,100) |
| Average pLDDT? | 88.96 |
| CAZy50 ID | 52820 |
| CAZy50 Rep | No, QNT68891.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1404864 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Bradyrhizobium |
| Species | Bradyrhizobium cosmicum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRILVATDAW HPQVNGVVRT LTKLADAAEA LCVEFTFLTP QSFRTFAMPS YRDVRLAMPR | 60 |
| PARIVELIEE ARPDSIHIAT EGPIGLMVRR YCRQRKLPFT TSFHTRFPEY IRARVPVPES | 120 |
| LIWRALRRFH APSRAVMAAT PALARELGER GFANVVLWPR GVDTHLFHPR AIDLCLPAPV | 180 |
| FLSVGRVSVE KNLEAFLDLD LPGTKVVVGD GPARVALEEA YPDAIFLGQK HGEELADIYA | 240 |
| AADVFVFPSK TDTFGLVLLE ALASGLPVAA FPVKGPRDVI GDAPVGALDH DLRNACFAAL | 300 |
| DISRQDCVEF AADYTWEASA RAFVDSIKAV GAVLPGRNDA EQPRFVA | 347 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.96 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT4(179-287)
| MRILVATDAW HPQVNGVVRT LTKLADAAEA LCVEFTFLTP QSFRTFAMPS YRDVRLAMPR | 60 |
| PARIVELIEE ARPDSIHIAT EGPIGLMVRR YCRQRKLPFT TSFHTRFPEY IRARVPVPES | 120 |
| LIWRALRRFH APSRAVMAAT PALARELGER GFANVVLWPR GVDTHLFHPR AIDLCLPAPV | 180 |
| FLSVGRVSVE KNLEAFLDLD LPGTKVVVGD GPARVALEEA YPDAIFLGQK HGEELADIYA | 240 |
| AADVFVFPSK TDTFGLVLLE ALASGLPVAA FPVKGPRDVI GDAPVGALDH DLRNACFAAL | 300 |
| DISRQDCVEF AADYTWEASA RAFVDSIKAV GAVLPGRNDA EQPRFVA | 347 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.