CAZyme3D

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Entry ID

Information for CAZyme ID: QDO27402.1

Basic Information

GenBank IDQDO27402.1
FamilyCBM13, CE2
Sequence Length519
UniProt IDA0A7H5JKA7(100,100)Download
Average pLDDT?91.17
CAZy50 ID62650
CAZy50 RepNo, AZP22486.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2594458
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. S1A1-3

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHIAFSVSWW  GRGRRTGVLT  AVTALLAALL  TGLGTAGTAR  AATVDTSASY  VLVNRGSGKV60
LDVTGASTAD  GAGLTQWPRT  DSANQQFRFV  DSGGGYYRLK  AQHSGKVLDV  LNYSTADHAD120
IAQWSDAGGT  NQQFRLADSP  DGYVRLINRN  SGKAVEVDNA  STADGAKVVQ  YTDWGGANQQ180
WQLVRAAGVL  AQVQTAGRVK  DAGNTVQYSW  PGVYFEGRVS  GTGVGIVLND  SAADYDVQID240
GATVVTLVTP  GNTTHWINGL  SNSTHTVRLV  KRNDTPGDTS  TFGGFVAAPG  GAVLSKPAAR300
SRQIEFIGDS  LTVGYGNLST  SRTCTSDQLK  RNTNSDVSYG  ALTARQLNAD  YQINGYSGLG360
MVRNYNGGSP  DVTYRTFYDR  ALLNVSGDVW  QNPGTWRPQV  VVVNLGTNDF  STAINPGEPW420
TPDSLVAAYR  SAYGDFVQKL  RTRYGADTTI  VAVGAGQYAS  HVQQVVKARN  DAGDSRVRYW480
FLDDSGLDFL  GCDWHYSAHD  DRVIADRLTS  FIAGLPTGW519

Predicted 3D structure by AlphaFold2 with pLDDT = 91.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM13(50-192)+CE2(303-512)

MHIAFSVSWW  GRGRRTGVLT  AVTALLAALL  TGLGTAGTAR  AATVDTSASY  VLVNRGSGKV60
LDVTGASTAD  GAGLTQWPRT  DSANQQFRFV  DSGGGYYRLK  AQHSGKVLDV  LNYSTADHAD120
IAQWSDAGGT  NQQFRLADSP  DGYVRLINRN  SGKAVEVDNA  STADGAKVVQ  YTDWGGANQQ180
WQLVRAAGVL  AQVQTAGRVK  DAGNTVQYSW  PGVYFEGRVS  GTGVGIVLND  SAADYDVQID240
GATVVTLVTP  GNTTHWINGL  SNSTHTVRLV  KRNDTPGDTS  TFGGFVAAPG  GAVLSKPAAR300
SRQIEFIGDS  LTVGYGNLST  SRTCTSDQLK  RNTNSDVSYG  ALTARQLNAD  YQINGYSGLG360
MVRNYNGGSP  DVTYRTFYDR  ALLNVSGDVW  QNPGTWRPQV  VVVNLGTNDF  STAINPGEPW420
TPDSLVAAYR  SAYGDFVQKL  RTRYGADTTI  VAVGAGQYAS  HVQQVVKARN  DAGDSRVRYW480
FLDDSGLDFL  GCDWHYSAHD  DRVIADRLTS  FIAGLPTGW519

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help