CAZyme3D

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Entry ID

Information for CAZyme ID: QDO23854.1

Basic Information

GenBank IDQDO23854.1
FamilyCBM6, GH16_3
Sequence Length461
UniProt IDA0A856NNN5(100,100)Download
Average pLDDT?89.97
CAZy50 ID59756
CAZy50 RepNo, AWZ14228.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2594460
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. S1A1-8

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSEPSGTPVR  RGPLRRVILA  AVGTLTLAVA  AVLPANASAP  TPPAGWSQVF  VDDFNGAAGS60
GVNTSNWQYD  TGTSYPGGAA  NWGTGEVETM  TSSTNNVALD  GNGNLLITPR  RDASGNWTSG120
RIETTRTDFQ  PPAGGKLRVE  ARLQMPNVTG  AAAKGYWPAF  WTLGAPYRGN  YQNWPSVGEL180
DIMENVQGLN  TEWATMHCGT  NPGGPCNETS  GIGGNTPCAG  TTCQAGFHTY  AMEWDRSTSP240
EEIRFYLDGV  NFHTVKANQV  DATTWANATN  HGYFVILNVA  MGGGFPDAFG  GGPDSGTEPG300
HPLVVDYVQV  LQASGSGTTP  PPTGNRDAYG  AIQAESYDSQ  SGTSTETTTD  TGGGQDIGSL360
AGGDWALYKG  VNFGSTAATQ  FYGRVASGAA  SGVSGLVEVR  LDSRTSTPIG  SFAVGNTGGW420
QSWRTVPANI  TGVTGTHDVY  LTFTSGQPAD  FVNVNWFDFG  H461

Predicted 3D structure by AlphaFold2 with pLDDT = 89.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_3(52-310)+CBM6(333-459)

MSEPSGTPVR  RGPLRRVILA  AVGTLTLAVA  AVLPANASAP  TPPAGWSQVF  VDDFNGAAGS60
GVNTSNWQYD  TGTSYPGGAA  NWGTGEVETM  TSSTNNVALD  GNGNLLITPR  RDASGNWTSG120
RIETTRTDFQ  PPAGGKLRVE  ARLQMPNVTG  AAAKGYWPAF  WTLGAPYRGN  YQNWPSVGEL180
DIMENVQGLN  TEWATMHCGT  NPGGPCNETS  GIGGNTPCAG  TTCQAGFHTY  AMEWDRSTSP240
EEIRFYLDGV  NFHTVKANQV  DATTWANATN  HGYFVILNVA  MGGGFPDAFG  GGPDSGTEPG300
HPLVVDYVQV  LQASGSGTTP  PPTGNRDAYG  AIQAESYDSQ  SGTSTETTTD  TGGGQDIGSL360
AGGDWALYKG  VNFGSTAATQ  FYGRVASGAA  SGVSGLVEVR  LDSRTSTPIG  SFAVGNTGGW420
QSWRTVPANI  TGVTGTHDVY  LTFTSGQPAD  FVNVNWFDFG  H461

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help