CAZyme3D

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Entry ID

Information for CAZyme ID: QDO17283.1

Basic Information

GenBank IDQDO17283.1
FamilyCBM46, GH5_4
Sequence Length589
UniProt IDA0A856N4W8(100,100)Download
Average pLDDT?92.60
CAZy50 ID36076
CAZy50 RepNo, UZN03284.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2594460
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. S1A1-8

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKDIRRPAHH  RSRGPGRLAG  LLMSLLVILG  LSGSTALAAT  DGTAQQALAT  IKVPSGAKDA60
VAAMQPSWNL  GNTLDAIPDE  TSWGNPKATR  ELFKTIRAQG  FHSVRIPVTW  SAHQSTTAPY120
TVDAAYLSRV  KEVVDWAQAE  NLYVVLNVHH  DSWQWISKIS  TDHDNVLARY  DALWTQISAT180
FRNEPRTLLF  ESVNEPSFDD  ATAAQKTQLM  NELNTSFHEI  VRASGGANKG  RLLVLTTQGG240
TPSQDLMDDL  YTTISALHDS  NLVATVHYYS  YYPFSVNVAG  GTRYDTAAQN  DLTDAFARMH300
DTFVDRGIPV  YLGEYGLLAW  PDHNHPDRVE  RGEALKYFEH  LGYTARQAGV  TTALWDPGTF360
AYLNRDTLKW  QDPALFAWIK  SSWTTRSGTA  SFDKVFVAKS  SRITAQSLTL  NLNGTKFQSL420
WDGDTKLVAG  KDYTVFKDRL  TLTAQALTRL  TGERDYGVNA  TLQARFSRGL  PWKIDVVTYD480
TPVLSNATGT  PDSFTLPTKY  QGDLLATMEA  TYADGSNAGQ  TSWTPYQEFN  AAFSPDYPNG540
TIILTPEFLK  ALRDGEPATL  TFHFHSGAKV  KYKVTKSGDS  VTGTAVTES589

Predicted 3D structure by AlphaFold2 with pLDDT = 92.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(80-358)+CBM46(390-476)+CBM46(538-574)

MKDIRRPAHH  RSRGPGRLAG  LLMSLLVILG  LSGSTALAAT  DGTAQQALAT  IKVPSGAKDA60
VAAMQPSWNL  GNTLDAIPDE  TSWGNPKATR  ELFKTIRAQG  FHSVRIPVTW  SAHQSTTAPY120
TVDAAYLSRV  KEVVDWAQAE  NLYVVLNVHH  DSWQWISKIS  TDHDNVLARY  DALWTQISAT180
FRNEPRTLLF  ESVNEPSFDD  ATAAQKTQLM  NELNTSFHEI  VRASGGANKG  RLLVLTTQGG240
TPSQDLMDDL  YTTISALHDS  NLVATVHYYS  YYPFSVNVAG  GTRYDTAAQN  DLTDAFARMH300
DTFVDRGIPV  YLGEYGLLAW  PDHNHPDRVE  RGEALKYFEH  LGYTARQAGV  TTALWDPGTF360
AYLNRDTLKW  QDPALFAWIK  SSWTTRSGTA  SFDKVFVAKS  SRITAQSLTL  NLNGTKFQSL420
WDGDTKLVAG  KDYTVFKDRL  TLTAQALTRL  TGERDYGVNA  TLQARFSRGL  PWKIDVVTYD480
TPVLSNATGT  PDSFTLPTKY  QGDLLATMEA  TYADGSNAGQ  TSWTPYQEFN  AAFSPDYPNG540
TIILTPEFLK  ALRDGEPATL  TFHFHSGAKV  KYKVTKSGDS  VTGTAVTES589

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help