CAZyme3D

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Entry ID

Information for CAZyme ID: QDM09624.1

Basic Information

GenBank IDQDM09624.1
FamilyGH50
Sequence Length517
UniProt IDA0A515IQX0(100,100)Download
Average pLDDT?91.86
CAZy50 ID65176
CAZy50 RepNo, QUT44995.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28116
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides ovatus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLFILGTF  LFISSIPMVS  CTDDDDKDPN  FMPPDIVMGG  GDVESEYPED  LPAPGASVMY60
TPSLNANMYR  PISVKYSSAY  PPISSWKTEN  TRIIAYMDGY  KPAIKTLKAY  QESVNKYGSS120
TTLPKQAATG  RFYTKKIDGR  WWLVDPEGCL  HLERSATSLR  KGTSSRNKTA  WNSRFGADEK180
WLSTTQRELS  EIGFHGTGAF  CTGTYSLIQT  HNASNPSSPL  TLAPSFAFLS  QFKSAKSYNY240
PGGSDDNAAG  LVFYNGWAEW  CESYLAGSAF  ADYLRDPNVL  GFFSDNEINF  SSNSSRILDR300
FLAISNSSDP  AYVAAKAFMD  SKGTQSVTDD  LNNEFAGIVA  EKYYKAVKEA  VKKVDDKLLY360
LGTRLHGTPK  YMEGVVRAAG  KYCDVISINY  YSRWSPELTT  AIADWANWAD  KPFLVSEFYT420
KGVEDSDLNN  QSGAGYSVPT  QNERAYAYQH  FTLGLLEAKN  CIGWHWFKYQ  DDDGTDNSSK480
PANKGLYDNS  YQLFPYLSFF  ARELNFNAYD  LIQYFDK517

Predicted 3D structure by AlphaFold2 with pLDDT = 91.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(165-509)

MKKLFILGTF  LFISSIPMVS  CTDDDDKDPN  FMPPDIVMGG  GDVESEYPED  LPAPGASVMY60
TPSLNANMYR  PISVKYSSAY  PPISSWKTEN  TRIIAYMDGY  KPAIKTLKAY  QESVNKYGSS120
TTLPKQAATG  RFYTKKIDGR  WWLVDPEGCL  HLERSATSLR  KGTSSRNKTA  WNSRFGADEK180
WLSTTQRELS  EIGFHGTGAF  CTGTYSLIQT  HNASNPSSPL  TLAPSFAFLS  QFKSAKSYNY240
PGGSDDNAAG  LVFYNGWAEW  CESYLAGSAF  ADYLRDPNVL  GFFSDNEINF  SSNSSRILDR300
FLAISNSSDP  AYVAAKAFMD  SKGTQSVTDD  LNNEFAGIVA  EKYYKAVKEA  VKKVDDKLLY360
LGTRLHGTPK  YMEGVVRAAG  KYCDVISINY  YSRWSPELTT  AIADWANWAD  KPFLVSEFYT420
KGVEDSDLNN  QSGAGYSVPT  QNERAYAYQH  FTLGLLEAKN  CIGWHWFKYQ  DDDGTDNSSK480
PANKGLYDNS  YQLFPYLSFF  ARELNFNAYD  LIQYFDK517

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help