CAZyme3D

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Entry ID

Information for CAZyme ID: QDI88747.1

Basic Information

GenBank IDQDI88747.1
FamilyGT0
Sequence Length340
UniProt IDA0A514LA85(100,100)Download
Average pLDDT?93.70
CAZy50 ID134862
CAZy50 RepNo, AJA92549.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2508726
KingdomArchaea
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosopumilus
SpeciesCandidatus Nitrosopumilus sp. SW

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVTVNFFSSP  IGLGHITRDI  AIKNNFQNIT  TNFVTGSGAA  KILKKLEVQV  DDVYNPPSFI60
VKNGTLQNPA  KWLWNYYQYY  KDCKNISHEI  LQKYNPRVVI  SDEDFASLSV  AQKIKIPTIL120
ITDILETHFT  KGLASLIEKK  MNKSMFEIIK  KCEVVILPEI  GNSENNIQRV  GPIVRRTDYT180
REQLREKFLF  NKKTIVISIG  GTDAGYFLIE  KALDAIKKIN  QDIQVVLVSG  PSVQKKYENV240
KNLGFVENLH  EIIYAADVLI  SLAGKSTIDE  ANAYGTPAIF  IPIKGHFEQE  DNAREQGFVF300
EDIERLDKLI  MSKLEEKRNQ  INTEGAKKAA  KIIQSLIDNY  340

Predicted 3D structure by AlphaFold2 with pLDDT = 93.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(199-294)

MVTVNFFSSP  IGLGHITRDI  AIKNNFQNIT  TNFVTGSGAA  KILKKLEVQV  DDVYNPPSFI60
VKNGTLQNPA  KWLWNYYQYY  KDCKNISHEI  LQKYNPRVVI  SDEDFASLSV  AQKIKIPTIL120
ITDILETHFT  KGLASLIEKK  MNKSMFEIIK  KCEVVILPEI  GNSENNIQRV  GPIVRRTDYT180
REQLREKFLF  NKKTIVISIG  GTDAGYFLIE  KALDAIKKIN  QDIQVVLVSG  PSVQKKYENV240
KNLGFVENLH  EIIYAADVLI  SLAGKSTIDE  ANAYGTPAIF  IPIKGHFEQE  DNAREQGFVF300
EDIERLDKLI  MSKLEEKRNQ  INTEGAKKAA  KIIQSLIDNY  340

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help