CAZyme3D

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Entry ID

Information for CAZyme ID: QDH80961.1

Basic Information

GenBank IDQDH80961.1
FamilyGH125
Sequence Length472
UniProt IDA0A514CMC7(100,100)Download
Average pLDDT?93.99
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2591634
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusEchinicola
SpeciesEchinicola soli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRRDFIKTS  AAASFGLAMG  PGASMAAGLA  WKETNRPPRA  QRNFTSKAVE  NTIDEIKKNL60
KDKELAWLFE  NCFPNTLDTT  VEYSEENGEP  DTFVITGDIH  AMWLRDSSAQ  VWPYVTLVNE120
DKKLKRLIQG  VINRHNESII  IDPYANAFNN  GPTGSEWESD  HTDMKPELHE  RKWEIDSLCY180
AVRLANGYWK  ETGDAGIFDD  RWEKAMKLVV  KTFKEQQRKE  DKGPYHFQRT  TPRATDTLSG240
DGYGNPVKPV  GLICSAFRPS  DDATIFPFLV  PSNLFAVQSL  RQLAAIYKEV  KNDAISAKEC300
EDLANEVEKA  LHKYAVAEHL  DYGKIYAFEV  DGYGNQLFMD  DSNVPSLLSM  GYLGSLDIDD360
PIYQNTRNFV  LSEDNPYFFS  GKAAKGIGGP  HVGMDYIWHM  SITLQAMTAT  DDAEIKQCLE420
WLKSTHAGTG  FMHEGFHKDD  PDNFTRSWFA  WANTLFGELI  YTLYKEKPHL  LT472

Predicted 3D structure by AlphaFold2 with pLDDT = 93.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(62-460)

MIRRDFIKTS  AAASFGLAMG  PGASMAAGLA  WKETNRPPRA  QRNFTSKAVE  NTIDEIKKNL60
KDKELAWLFE  NCFPNTLDTT  VEYSEENGEP  DTFVITGDIH  AMWLRDSSAQ  VWPYVTLVNE120
DKKLKRLIQG  VINRHNESII  IDPYANAFNN  GPTGSEWESD  HTDMKPELHE  RKWEIDSLCY180
AVRLANGYWK  ETGDAGIFDD  RWEKAMKLVV  KTFKEQQRKE  DKGPYHFQRT  TPRATDTLSG240
DGYGNPVKPV  GLICSAFRPS  DDATIFPFLV  PSNLFAVQSL  RQLAAIYKEV  KNDAISAKEC300
EDLANEVEKA  LHKYAVAEHL  DYGKIYAFEV  DGYGNQLFMD  DSNVPSLLSM  GYLGSLDIDD360
PIYQNTRNFV  LSEDNPYFFS  GKAAKGIGGP  HVGMDYIWHM  SITLQAMTAT  DDAEIKQCLE420
WLKSTHAGTG  FMHEGFHKDD  PDNFTRSWFA  WANTLFGELI  YTLYKEKPHL  LT472

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help