CAZyme3D

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Entry ID

Information for CAZyme ID: QDH70340.1

Basic Information

GenBank IDQDH70340.1
FamilyGH62
Sequence Length357
UniProt IDA0A514BSI3(100,100)Download
Average pLDDT?91.14
CAZy50 ID123386
CAZy50 RepNo, WBY08852.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2591633
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusLysobacter
SpeciesLysobacter alkalisoli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHNYKSSLAG  FNALWFASCL  ALSTLAHAAE  PATRAKPFEW  KSSEPLIKPP  ADAKDIHGVK60
DPTIVYHDGR  YHVFITTAAA  TGWGMAYTSF  VDWDEAPNAP  LFMLDQSPIG  PGYRAAPQVF120
YFAPQELWYL  IYQGGDPLYS  TTRNLADPGS  WTAPQPFYPT  IPESVKDANG  KAAWLDFWNI180
CDDKKCHLFF  TDDHGSFFRG  ETTVERFPHG  FSEPVVVMKE  KRDDMFEASN  TYRITGTHQY240
LTLIEAIGPN  GRYFRAWTAD  RLDGKWQPIP  GARMNMFAGA  ENVTFNGRIW  SEGVSHGELI300
RDGVDQTLSI  DPCQPLRFLY  QGLDMEKDKK  YEYIELPYRL  GVITATAPNA  ISELCKK357

Predicted 3D structure by AlphaFold2 with pLDDT = 91.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH62(36-314)

MHNYKSSLAG  FNALWFASCL  ALSTLAHAAE  PATRAKPFEW  KSSEPLIKPP  ADAKDIHGVK60
DPTIVYHDGR  YHVFITTAAA  TGWGMAYTSF  VDWDEAPNAP  LFMLDQSPIG  PGYRAAPQVF120
YFAPQELWYL  IYQGGDPLYS  TTRNLADPGS  WTAPQPFYPT  IPESVKDANG  KAAWLDFWNI180
CDDKKCHLFF  TDDHGSFFRG  ETTVERFPHG  FSEPVVVMKE  KRDDMFEASN  TYRITGTHQY240
LTLIEAIGPN  GRYFRAWTAD  RLDGKWQPIP  GARMNMFAGA  ENVTFNGRIW  SEGVSHGELI300
RDGVDQTLSI  DPCQPLRFLY  QGLDMEKDKK  YEYIELPYRL  GVITATAPNA  ISELCKK357

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help