CAZyme3D

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Entry ID

Information for CAZyme ID: QDH61058.1

Basic Information

GenBank IDQDH61058.1
FamilyGT112
Sequence Length436
UniProt IDA0A378YIQ0(100,100)Download
Average pLDDT?89.65
CAZy50 ID36924
CAZy50 RepNo, BAM89986.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID93220
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea pnomenusa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNDIASPTPA  CRPPSLDASP  SSAADVSPLP  GTSGAPIAPV  GPFAQSPRQI  FLPPALLPTQ60
VGPAGLRYDF  NDGARVVIPD  FGQPLPWRVR  ISDLRNDATL  ADVPLSSGVV  RSPAKYYVPY120
GITIWLNDVV  VFEHRYDARH  QDVLVQFPLA  ALGDVLGWLP  YALRFADVHG  CRLACVVTPG180
VAALFRDAYP  DVDFVAQDQV  ERRKYYATYN  VGLFFDDKAR  LQQPRDFRET  GLHRTAAHIL240
GVDDGEAHAR  TALPDTSCPM  AAPYVCIAVQ  STAQCKYWNH  PQGWETVVAG  LRARGFEVVC300
IDQKPRHGKG  DFWQTVPEGA  IDATGDLPLT  ERARWLAHAR  AFVGLSSGLS  WLAWTMRTPT360
VLVSGFTLPH  NEFDTPYRVI  APQVCTGCWH  DPALRYDHDD  FHWCPRHKDT  PRAFECTRAI420
TPERVLAAVD  RALGIN436

Predicted 3D structure by AlphaFold2 with pLDDT = 89.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(58-430)

MNDIASPTPA  CRPPSLDASP  SSAADVSPLP  GTSGAPIAPV  GPFAQSPRQI  FLPPALLPTQ60
VGPAGLRYDF  NDGARVVIPD  FGQPLPWRVR  ISDLRNDATL  ADVPLSSGVV  RSPAKYYVPY120
GITIWLNDVV  VFEHRYDARH  QDVLVQFPLA  ALGDVLGWLP  YALRFADVHG  CRLACVVTPG180
VAALFRDAYP  DVDFVAQDQV  ERRKYYATYN  VGLFFDDKAR  LQQPRDFRET  GLHRTAAHIL240
GVDDGEAHAR  TALPDTSCPM  AAPYVCIAVQ  STAQCKYWNH  PQGWETVVAG  LRARGFEVVC300
IDQKPRHGKG  DFWQTVPEGA  IDATGDLPLT  ERARWLAHAR  AFVGLSSGLS  WLAWTMRTPT360
VLVSGFTLPH  NEFDTPYRVI  APQVCTGCWH  DPALRYDHDD  FHWCPRHKDT  PRAFECTRAI420
TPERVLAAVD  RALGIN436

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help