CAZyme3D

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Entry ID

Information for CAZyme ID: QDH16817.1

Basic Information

GenBank IDQDH16817.1
FamilyGT112
Sequence Length454
UniProt IDA0A4Y6UKB1(100,100)Download
Average pLDDT?89.14
CAZy50 ID73516
CAZy50 RepNo, AHK70887.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1293412
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusSwingsia
SpeciesSwingsia samuiensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSEQQSDSLS  STTTEKEGLP  SAVTSEASAS  PSSAKEEKQE  SPYVLPSQTP  AIEGKMGIRF60
DFNDGARVMV  PPLADKDQQW  HVRLSDYSMG  NILFDAHIPQ  GMASSTKKFF  VPFELEVWLQ120
KKDGTEEKIL  DHKLSLKGQR  VLVQLPVGTL  GDTLAWLPPV  IRFAKENEAH  VTCTIADVIL180
PLVEKANPEI  KFVGKDKAAK  IKGFADDFYA  TYKLGLFFQD  KEFTYQPTDF  RHVGLHRTAA240
YILGINPWDD  SPPALDIPDG  DTPPIKEPYV  VIATQASTQC  KYWNNPAGWH  EVVDYLKRSG300
FRVVCIDQKM  FHGTGYVYNH  IPFGVEDETG  NRSLGERARW  LKHASFFVGL  SSGLSWLAHA360
AGTPVVMISG  FTHPNNEFFT  PYRVINWHTC  NSCWNDPAHQ  FDHSDFLWCP  RHKGTDRQFE420
CTRLITGKSV  INIIEKLMKD  KKLISKNGKI  EKQV454

Predicted 3D structure by AlphaFold2 with pLDDT = 89.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(50-435)

MSEQQSDSLS  STTTEKEGLP  SAVTSEASAS  PSSAKEEKQE  SPYVLPSQTP  AIEGKMGIRF60
DFNDGARVMV  PPLADKDQQW  HVRLSDYSMG  NILFDAHIPQ  GMASSTKKFF  VPFELEVWLQ120
KKDGTEEKIL  DHKLSLKGQR  VLVQLPVGTL  GDTLAWLPPV  IRFAKENEAH  VTCTIADVIL180
PLVEKANPEI  KFVGKDKAAK  IKGFADDFYA  TYKLGLFFQD  KEFTYQPTDF  RHVGLHRTAA240
YILGINPWDD  SPPALDIPDG  DTPPIKEPYV  VIATQASTQC  KYWNNPAGWH  EVVDYLKRSG300
FRVVCIDQKM  FHGTGYVYNH  IPFGVEDETG  NRSLGERARW  LKHASFFVGL  SSGLSWLAHA360
AGTPVVMISG  FTHPNNEFFT  PYRVINWHTC  NSCWNDPAHQ  FDHSDFLWCP  RHKGTDRQFE420
CTRLITGKSV  INIIEKLMKD  KKLISKNGKI  EKQV454

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help